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science/py-hoomd-blue: update 4.9.1 → 5.0.0

Browse source 
Reported by:	portscout
This commit is contained in:
Yuri Victorovich 2024-12-04 12:36:22 -08:00
parent 7ad2e02276
commit 98418d6858
4 changed files with 45 additions and 134 deletions
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20
science/py-hoomd-blue/Makefile
View file

@ -1,6 +1,6 @@
PORTNAME= hoomd-blue
DISTVERSIONPREFIX= v
DISTVERSION= 4.9.1
DISTVERSION= 5.0.0
CATEGORIES= science # physics
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
@ -19,14 +19,16 @@ USES= cmake:testing compiler:c++17-lang eigen:3 localbase:ldflags python sheban
USE_GITHUB= yes
GH_ACCOUNT= glotzerlab
GH_TUPLE= glotzerlab:upp11:0c1fb8d:glotzerlab_upp11/hoomd/extern/upp11 \
glotzerlab:nano-signal-slot:34223a4:glotzerlab_nano_signal_slot/hoomd/extern/nano-signal-slot \
glotzerlab:quickhull:1ffbc6f:glotzerlab_quickhull/hoomd/extern/quickhull \
glotzerlab:random123:a2c4f04:glotzerlab_random123/hoomd/extern/random123 \
glotzerlab:HIP:d211f99:glotzerlab_HIP/hoomd/extern/HIP \
glotzerlab:hipCUB:c70e193:glotzerlab_hipCUB/hoomd/extern/hipCUB \
mphowardlab:neighbor:ba0f068:mphowardlab_neighbor/hoomd/extern/neighbor \
mphowardlab:hipper:b6da049:mphowardlab_hipper/hoomd/extern/hipper
GH_TUPLE= glotzerlab:upp11:0c1fb8dfb4bcdc1c5c4eff9165539b15e70c4360:glotzerlab_upp11/hoomd/extern/upp11 \
glotzerlab:nano-signal-slot:34223a4a7e97f8e114ef007e5360cf7a71265da3:glotzerlab_nano_signal_slot/hoomd/extern/nano-signal-slot \
glotzerlab:quickhull:1ffbc6f884ea1da89e104a5996cf8a726db673d5:glotzerlab_quickhull/hoomd/extern/quickhull \
glotzerlab:HIP:d211f99eebb3637b6840f310f8797abb25012c18:glotzerlab_HIP/hoomd/extern/HIP \
glotzerlab:hipCUB:c70e19332a8402049b3359b409e50220a759c42d:glotzerlab_hipCUB/hoomd/extern/hipCUB \
mphowardlab:neighbor:ba0f06869b766066a7068852fa3b8c5fa746f71f:mphowardlab_neighbor/hoomd/extern/neighbor \
mphowardlab:hipper:b6da049a516ada03e4e1b66ca6b4c2c7c9668595:mphowardlab_hipper/hoomd/extern/hipper \
glotzerlab:hoomd-examples:2710e2708877e375a56d2faa1df7d400b12d75a2:glotzerlab_hoomd_examples/sphinx-doc/tutorial \
glotzerlab:OpenRAND:92dc12a23dff2d0aa3545f749d1c013677b9a87e:glotzerlab_OpenRAND/hoomd/extern/OpenRAND \
mphowardlab:hipper:b6da049a516ada03e4e1b66ca6b4c2c7c9668595:mphowardlab_hipper/hoomd/extern/hipper
SHEBANG_GLOB= *.sh

40
science/py-hoomd-blue/distinfo
View file

@ -1,19 +1,21 @@
TIMESTAMP = 1730613350
SHA256 (glotzerlab-hoomd-blue-v4.9.1_GH0.tar.gz) = 80f474a209b621215ea005acac1340e123551b06fda1b678cceab97fc51ead50
SIZE (glotzerlab-hoomd-blue-v4.9.1_GH0.tar.gz) = 2939390
SHA256 (glotzerlab-upp11-0c1fb8d_GH0.tar.gz) = fe9db1b06fd504876e243c9031a594edbd0323e8337f908885f31cc980f642e9
SIZE (glotzerlab-upp11-0c1fb8d_GH0.tar.gz) = 21024
SHA256 (glotzerlab-nano-signal-slot-34223a4_GH0.tar.gz) = bfe51f7dd2cc097b70202f849c1a42a13ea5f53a1e902e053df155c3a157c30b
SIZE (glotzerlab-nano-signal-slot-34223a4_GH0.tar.gz) = 4747
SHA256 (glotzerlab-quickhull-1ffbc6f_GH0.tar.gz) = b57bf720afd1c44741d7d7018501a9ce4f869897ea9530a0d2cc076873f96e11
SIZE (glotzerlab-quickhull-1ffbc6f_GH0.tar.gz) = 16242
SHA256 (glotzerlab-random123-a2c4f04_GH0.tar.gz) = 9d24475b2544cfe9cf9c1f2fc43e811d8861869b1ec0ee9b8bf7586c27e06007
SIZE (glotzerlab-random123-a2c4f04_GH0.tar.gz) = 318755
SHA256 (glotzerlab-HIP-d211f99_GH0.tar.gz) = 16913e77070effade693b326449bd4fd688cf6550d47b698a7e03affe215f206
SIZE (glotzerlab-HIP-d211f99_GH0.tar.gz) = 897743
SHA256 (glotzerlab-hipCUB-c70e193_GH0.tar.gz) = c9f132a8359e8ee3074f8f56b8070d9aa3c5d60eecea330529ed4020236d77fd
SIZE (glotzerlab-hipCUB-c70e193_GH0.tar.gz) = 110385
SHA256 (mphowardlab-neighbor-ba0f068_GH0.tar.gz) = e21cef8dab85131d2cc5f2d1b49bd1030d27b9e24c2cde5f18fe57744faeb9a8
SIZE (mphowardlab-neighbor-ba0f068_GH0.tar.gz) = 49050
SHA256 (mphowardlab-hipper-b6da049_GH0.tar.gz) = b332ae31399ba972e1ac57428e92385291ba7f1100b2fb45ab2b7e77391d037f
SIZE (mphowardlab-hipper-b6da049_GH0.tar.gz) = 20201
TIMESTAMP = 1733334979
SHA256 (glotzerlab-hoomd-blue-v5.0.0_GH0.tar.gz) = 09a568d87eaa0af09a75512f8b5b2118d1f3f54dcbf89dbb9794b804a6193852
SIZE (glotzerlab-hoomd-blue-v5.0.0_GH0.tar.gz) = 2768876
SHA256 (glotzerlab-upp11-0c1fb8dfb4bcdc1c5c4eff9165539b15e70c4360_GH0.tar.gz) = 759695139bddae1d8a7cd52c967b856d6debf28fb37ea177f78c4434e2b210a8
SIZE (glotzerlab-upp11-0c1fb8dfb4bcdc1c5c4eff9165539b15e70c4360_GH0.tar.gz) = 21058
SHA256 (glotzerlab-nano-signal-slot-34223a4a7e97f8e114ef007e5360cf7a71265da3_GH0.tar.gz) = d15030482c82d9e4a99c2f67d8ef23b33cc318dd48ac0f8e804c6d4750f27ff4
SIZE (glotzerlab-nano-signal-slot-34223a4a7e97f8e114ef007e5360cf7a71265da3_GH0.tar.gz) = 4748
SHA256 (glotzerlab-quickhull-1ffbc6f884ea1da89e104a5996cf8a726db673d5_GH0.tar.gz) = 55c87e78bf990509ff35e3e039213ca6e3890ce988c2891647d65079696ae3a9
SIZE (glotzerlab-quickhull-1ffbc6f884ea1da89e104a5996cf8a726db673d5_GH0.tar.gz) = 16242
SHA256 (glotzerlab-HIP-d211f99eebb3637b6840f310f8797abb25012c18_GH0.tar.gz) = badcb27eb7d540a668877dd193aba529755d5f69c8e6411ee495668984640e5c
SIZE (glotzerlab-HIP-d211f99eebb3637b6840f310f8797abb25012c18_GH0.tar.gz) = 898870
SHA256 (glotzerlab-hipCUB-c70e19332a8402049b3359b409e50220a759c42d_GH0.tar.gz) = f3dbd921ea8c5fe9068d6d9e6e9112c11c7e18488169ce48423d9fdb014536c6
SIZE (glotzerlab-hipCUB-c70e19332a8402049b3359b409e50220a759c42d_GH0.tar.gz) = 110500
SHA256 (mphowardlab-neighbor-ba0f06869b766066a7068852fa3b8c5fa746f71f_GH0.tar.gz) = 089129a1539d8e993f725017f1aadc60f9e40116e8a65dfbe70b0df9ac2d7cf3
SIZE (mphowardlab-neighbor-ba0f06869b766066a7068852fa3b8c5fa746f71f_GH0.tar.gz) = 49039
SHA256 (mphowardlab-hipper-b6da049a516ada03e4e1b66ca6b4c2c7c9668595_GH0.tar.gz) = c64a484884eaab3eb9fd8f7b27b144a7bfadfeab101e95d82bc2a6f7e4fb7cec
SIZE (mphowardlab-hipper-b6da049a516ada03e4e1b66ca6b4c2c7c9668595_GH0.tar.gz) = 20228
SHA256 (glotzerlab-hoomd-examples-2710e2708877e375a56d2faa1df7d400b12d75a2_GH0.tar.gz) = 5d20f4b15cd785bc730a8b5ac10cb3f8632c5bbc088fc684223706576e31513c
SIZE (glotzerlab-hoomd-examples-2710e2708877e375a56d2faa1df7d400b12d75a2_GH0.tar.gz) = 5969219
SHA256 (glotzerlab-OpenRAND-92dc12a23dff2d0aa3545f749d1c013677b9a87e_GH0.tar.gz) = a84657d9ac24083c1aef3d883927d5993270697af69a04f616227f9077eb8e19
SIZE (glotzerlab-OpenRAND-92dc12a23dff2d0aa3545f749d1c013677b9a87e_GH0.tar.gz) = 298040

18
science/py-hoomd-blue/files/patch-hoomd_GPUFlags.h
View file

@ -1,18 +0,0 @@
Fix build with LLVM 19
/wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.9.0/hoomd/GPUFlags.h:160:27:
error: reference to non-static member function must be called
160 | this->resetFlags(from.readFlags);
| ~~~~~^~~~~~~~~
--- hoomd/GPUFlags.h.orig 2024-10-31 16:09:15 UTC
+++ hoomd/GPUFlags.h
@@ -157,7 +157,7 @@ GPUFlags<T>::GPUFlags(const GPUFlags& from)
memclear();
// copy over the data to the new GPUFlags
- this->resetFlags(from.readFlags);
+ this->resetFlags(from.readFlags());
}
template<class T> GPUFlags<T>& GPUFlags<T>::operator=(const GPUFlags& rhs)

101
science/py-hoomd-blue/pkg-plist
View file

@ -1,5 +1,4 @@
lib/cmake/hoomd/FindCUDALibs.cmake
lib/cmake/hoomd/FindTBB.cmake
lib/cmake/hoomd/HOOMDHIPSetup.cmake
lib/cmake/hoomd/hoomd-config-version.cmake
lib/cmake/hoomd/hoomd-config.cmake
@ -7,7 +6,6 @@ lib/cmake/hoomd/hoomd-macros.cmake
lib/cmake/hoomd/hoomd-targets-%%CMAKE_BUILD_TYPE%%.cmake
lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/__init__.py
%%PYTHON_SITELIBDIR%%/hoomd/_compile.py
%%PYTHON_SITELIBDIR%%/hoomd/_hoomd%%PYTHON_EXT_SUFFIX%%.so
%%PYTHON_SITELIBDIR%%/hoomd/box.py
%%PYTHON_SITELIBDIR%%/hoomd/communicator.py
@ -44,8 +42,8 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/external/__init__.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/external/external.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/external/field.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/external/harmonic.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/external/linear.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/external/user.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/external/wall.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/integrate.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/nec/__init__.py
@ -60,17 +58,16 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/pair.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/step.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/union.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/user.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/__init__.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/conftest.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_boxmc.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_boxmc_move_tuner.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_clusters.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_compute_free_volume.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_compute_sdf.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_external_field.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_external_user.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_external_wall.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_gca.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_kt.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_move_size_tuner.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_muvt.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_angular_step.py
@ -80,8 +77,6 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_opp.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_step.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_union.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_union_user.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_user.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_quick_compress.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_scale.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_shape.py
@ -127,13 +122,11 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/ForceConstraint.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GPUArray.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GPUFlags.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GPUPartition.cuh
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GPUVector.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GSD.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GSDDequeWriter.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GSDDumpWriter.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GSDReader.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GlobalArray.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/HOOMDMPI.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/HOOMDMath.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/HalfStepHook.h
@ -301,6 +294,12 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/HIP/tests/src/gcc/LaunchKernel.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/HIP/tests/src/runtimeApi/stream/hipStream.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/HIP/tests/src/test_common.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/OpenRAND/include/openrand/base_state.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/OpenRAND/include/openrand/philox.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/OpenRAND/include/openrand/squares.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/OpenRAND/include/openrand/threefry.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/OpenRAND/include/openrand/tyche.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/OpenRAND/include/openrand/util.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/_kiss_fft_guts.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/cudacpu_host_defines.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/cudacpu_vector_functions.h
@ -375,7 +374,6 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/hipper/tests/test_hipper.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/hipper/tools/FindCatch2.cmake
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/hipper/tools/Findhipper.cmake
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/jitify.hpp
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/kiss_fft.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/kiss_fftnd.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/nano-signal-slot/nano_function.hpp
@ -418,52 +416,6 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/quickhull/Structs/Vector3.hpp
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/quickhull/Structs/VertexDataSource.hpp
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/quickhull/Tests/QuickHullTests.hpp
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/examples/example_seeds.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/examples/pi_check.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/MicroURNG.hpp
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/ReinterpretCtr.hpp
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/aes.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/array.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/ars.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/boxmuller.hpp
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/conventional/Engine.hpp
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/conventional/gsl_cbrng.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/clangfeatures.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/compilerfeatures.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/fujitsufeatures.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/gccfeatures.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/iccfeatures.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/metalfeatures.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/msvcfeatures.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/nvccfeatures.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/open64features.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/openclfeatures.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/pgccfeatures.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/sse.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/sunprofeatures.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/xlcfeatures.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/gsl_microrng.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/philox.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/threefry.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/u01fixedpt.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/uniform.hpp
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/kat.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/kat_dev_execute.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/kat_main.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/rngNxW.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/time_initkeyctr.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/time_misc.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/time_random123.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/ut_uniform_IEEEkatvectors.hpp
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/ut_uniform_reference.hpp
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/util.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/util_cuda.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/util_demangle.hpp
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/util_expandtpl.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/util_m128.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/util_metal.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/util_opencl.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/util_print.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/triangle_triangle.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/upp11/upp11.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/filter/ParticleFilter.h
@ -481,7 +433,6 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ComputeFreeVolumeGPU.cuh
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ComputeFreeVolumeGPU.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ComputeSDF.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ExternalField.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ExternalFieldHarmonic.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ExternalFieldWall.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ExternalPotential.h
@ -495,12 +446,6 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMono.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPU.cuh
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPU.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPUDepletants.cuh
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPUDepletantsAuxilliaryPhase1.cuh
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPUDepletantsAuxilliaryPhase2.cuh
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPUDepletantsAuxilliaryTypes.cuh
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPUDepletantsTypes.cuh
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPUJIT.inc
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPUMoves.cuh
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPUTypes.cuh
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoNEC.h
@ -531,10 +476,9 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ShapeUtils.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/SphinxOverlap.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterBoxMC.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterClusters.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterClustersGPU.cuh
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterClustersGPU.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterClustersGPUDepletants.cuh
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterGCA.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterGCAGPU.cuh
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterGCAGPU.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterMuVT.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterQuickCompress.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterShape.h
@ -707,8 +651,6 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/VolumeConservationMeshParameters.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/WallData.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/ZeroMomentumUpdater.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/metal/EAMForceCompute.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/metal/EAMForceComputeGPU.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/ATCollisionMethod.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/BlockForce.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/BounceBackNVE.h
@ -721,6 +663,7 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/CollisionMethod.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/Communicator.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/CommunicatorUtilities.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/ConcentricCylindersGeometry.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/ConstantForce.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/CosineChannelGeometry.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/CosineExpansionContractionGeometry.h
@ -834,9 +777,6 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/md/tune/nlist_buffer.py
%%PYTHON_SITELIBDIR%%/hoomd/md/update.py
%%PYTHON_SITELIBDIR%%/hoomd/mesh.py
%%PYTHON_SITELIBDIR%%/hoomd/metal/__init__.py
%%PYTHON_SITELIBDIR%%/hoomd/metal/_metal%%PYTHON_EXT_SUFFIX%%.so
%%PYTHON_SITELIBDIR%%/hoomd/metal/pair.py
%%PYTHON_SITELIBDIR%%/hoomd/mpcd/__init__.py
%%PYTHON_SITELIBDIR%%/hoomd/mpcd/_mpcd%%PYTHON_EXT_SUFFIX%%.so
%%PYTHON_SITELIBDIR%%/hoomd/mpcd/collide.py
@ -859,11 +799,6 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/mpcd/tune.py
%%PYTHON_SITELIBDIR%%/hoomd/operation.py
%%PYTHON_SITELIBDIR%%/hoomd/operations.py
%%PYTHON_SITELIBDIR%%/hoomd/pair_plugin/__init__.py
%%PYTHON_SITELIBDIR%%/hoomd/pair_plugin/_pair_plugin%%PYTHON_EXT_SUFFIX%%.so
%%PYTHON_SITELIBDIR%%/hoomd/pair_plugin/pair.py
%%PYTHON_SITELIBDIR%%/hoomd/pair_plugin/pytest/__init__.py
%%PYTHON_SITELIBDIR%%/hoomd/pair_plugin/pytest/test_example_pair.py
%%PYTHON_SITELIBDIR%%/hoomd/pytest.ini
%%PYTHON_SITELIBDIR%%/hoomd/pytest/__init__.py
%%PYTHON_SITELIBDIR%%/hoomd/pytest/dummy.py
@ -901,11 +836,6 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/pytest/test_typeparam.py
%%PYTHON_SITELIBDIR%%/hoomd/pytest/test_variant.py
%%PYTHON_SITELIBDIR%%/hoomd/pytest_plugin_validate.py
%%PYTHON_SITELIBDIR%%/hoomd/shape_plugin/__init__.py
%%PYTHON_SITELIBDIR%%/hoomd/shape_plugin/_shape_plugin%%PYTHON_EXT_SUFFIX%%.so
%%PYTHON_SITELIBDIR%%/hoomd/shape_plugin/integrate.py
%%PYTHON_SITELIBDIR%%/hoomd/shape_plugin/pytest/__init__.py
%%PYTHON_SITELIBDIR%%/hoomd/shape_plugin/pytest/test_mysphere.py
%%PYTHON_SITELIBDIR%%/hoomd/simulation.py
%%PYTHON_SITELIBDIR%%/hoomd/snapshot.py
%%PYTHON_SITELIBDIR%%/hoomd/state.py
@ -921,11 +851,6 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/update/custom_updater.py
%%PYTHON_SITELIBDIR%%/hoomd/update/particle_filter.py
%%PYTHON_SITELIBDIR%%/hoomd/update/remove_drift.py
%%PYTHON_SITELIBDIR%%/hoomd/updater_plugin/__init__.py
%%PYTHON_SITELIBDIR%%/hoomd/updater_plugin/_updater_plugin%%PYTHON_EXT_SUFFIX%%.so
%%PYTHON_SITELIBDIR%%/hoomd/updater_plugin/pytest/__init__.py
%%PYTHON_SITELIBDIR%%/hoomd/updater_plugin/pytest/test_example_updater.py
%%PYTHON_SITELIBDIR%%/hoomd/updater_plugin/update.py
%%PYTHON_SITELIBDIR%%/hoomd/util.py
%%PYTHON_SITELIBDIR%%/hoomd/variant/__init__.py
%%PYTHON_SITELIBDIR%%/hoomd/variant/box.py