From 98418d6858b2fff66dd1ce92f5ebfe4f4fe06a38 Mon Sep 17 00:00:00 2001 From: Yuri Victorovich Date: Wed, 4 Dec 2024 12:36:22 -0800 Subject: [PATCH] =?UTF-8?q?science/py-hoomd-blue:=20update=204.9.1=20?= =?UTF-8?q?=E2=86=92=205.0.0?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Reported by: portscout --- science/py-hoomd-blue/Makefile | 20 ++-- science/py-hoomd-blue/distinfo | 40 +++---- .../files/patch-hoomd_GPUFlags.h | 18 ---- science/py-hoomd-blue/pkg-plist | 101 +++--------------- 4 files changed, 45 insertions(+), 134 deletions(-) delete mode 100644 science/py-hoomd-blue/files/patch-hoomd_GPUFlags.h diff --git a/science/py-hoomd-blue/Makefile b/science/py-hoomd-blue/Makefile index 13a2b9fe990f..786efb6125e8 100644 --- a/science/py-hoomd-blue/Makefile +++ b/science/py-hoomd-blue/Makefile @@ -1,6 +1,6 @@ PORTNAME= hoomd-blue DISTVERSIONPREFIX= v -DISTVERSION= 4.9.1 +DISTVERSION= 5.0.0 CATEGORIES= science # physics PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -19,14 +19,16 @@ USES= cmake:testing compiler:c++17-lang eigen:3 localbase:ldflags python sheban USE_GITHUB= yes GH_ACCOUNT= glotzerlab -GH_TUPLE= glotzerlab:upp11:0c1fb8d:glotzerlab_upp11/hoomd/extern/upp11 \ - glotzerlab:nano-signal-slot:34223a4:glotzerlab_nano_signal_slot/hoomd/extern/nano-signal-slot \ - glotzerlab:quickhull:1ffbc6f:glotzerlab_quickhull/hoomd/extern/quickhull \ - glotzerlab:random123:a2c4f04:glotzerlab_random123/hoomd/extern/random123 \ - glotzerlab:HIP:d211f99:glotzerlab_HIP/hoomd/extern/HIP \ - glotzerlab:hipCUB:c70e193:glotzerlab_hipCUB/hoomd/extern/hipCUB \ - mphowardlab:neighbor:ba0f068:mphowardlab_neighbor/hoomd/extern/neighbor \ - mphowardlab:hipper:b6da049:mphowardlab_hipper/hoomd/extern/hipper +GH_TUPLE= glotzerlab:upp11:0c1fb8dfb4bcdc1c5c4eff9165539b15e70c4360:glotzerlab_upp11/hoomd/extern/upp11 \ + glotzerlab:nano-signal-slot:34223a4a7e97f8e114ef007e5360cf7a71265da3:glotzerlab_nano_signal_slot/hoomd/extern/nano-signal-slot \ + glotzerlab:quickhull:1ffbc6f884ea1da89e104a5996cf8a726db673d5:glotzerlab_quickhull/hoomd/extern/quickhull \ + glotzerlab:HIP:d211f99eebb3637b6840f310f8797abb25012c18:glotzerlab_HIP/hoomd/extern/HIP \ + glotzerlab:hipCUB:c70e19332a8402049b3359b409e50220a759c42d:glotzerlab_hipCUB/hoomd/extern/hipCUB \ + mphowardlab:neighbor:ba0f06869b766066a7068852fa3b8c5fa746f71f:mphowardlab_neighbor/hoomd/extern/neighbor \ + mphowardlab:hipper:b6da049a516ada03e4e1b66ca6b4c2c7c9668595:mphowardlab_hipper/hoomd/extern/hipper \ + glotzerlab:hoomd-examples:2710e2708877e375a56d2faa1df7d400b12d75a2:glotzerlab_hoomd_examples/sphinx-doc/tutorial \ + glotzerlab:OpenRAND:92dc12a23dff2d0aa3545f749d1c013677b9a87e:glotzerlab_OpenRAND/hoomd/extern/OpenRAND \ + mphowardlab:hipper:b6da049a516ada03e4e1b66ca6b4c2c7c9668595:mphowardlab_hipper/hoomd/extern/hipper SHEBANG_GLOB= *.sh diff --git a/science/py-hoomd-blue/distinfo b/science/py-hoomd-blue/distinfo index 28fbbfa7b40e..abd6106c0cef 100644 --- a/science/py-hoomd-blue/distinfo +++ b/science/py-hoomd-blue/distinfo @@ -1,19 +1,21 @@ -TIMESTAMP = 1730613350 -SHA256 (glotzerlab-hoomd-blue-v4.9.1_GH0.tar.gz) = 80f474a209b621215ea005acac1340e123551b06fda1b678cceab97fc51ead50 -SIZE (glotzerlab-hoomd-blue-v4.9.1_GH0.tar.gz) = 2939390 -SHA256 (glotzerlab-upp11-0c1fb8d_GH0.tar.gz) = fe9db1b06fd504876e243c9031a594edbd0323e8337f908885f31cc980f642e9 -SIZE (glotzerlab-upp11-0c1fb8d_GH0.tar.gz) = 21024 -SHA256 (glotzerlab-nano-signal-slot-34223a4_GH0.tar.gz) = bfe51f7dd2cc097b70202f849c1a42a13ea5f53a1e902e053df155c3a157c30b -SIZE (glotzerlab-nano-signal-slot-34223a4_GH0.tar.gz) = 4747 -SHA256 (glotzerlab-quickhull-1ffbc6f_GH0.tar.gz) = b57bf720afd1c44741d7d7018501a9ce4f869897ea9530a0d2cc076873f96e11 -SIZE (glotzerlab-quickhull-1ffbc6f_GH0.tar.gz) = 16242 -SHA256 (glotzerlab-random123-a2c4f04_GH0.tar.gz) = 9d24475b2544cfe9cf9c1f2fc43e811d8861869b1ec0ee9b8bf7586c27e06007 -SIZE (glotzerlab-random123-a2c4f04_GH0.tar.gz) = 318755 -SHA256 (glotzerlab-HIP-d211f99_GH0.tar.gz) = 16913e77070effade693b326449bd4fd688cf6550d47b698a7e03affe215f206 -SIZE (glotzerlab-HIP-d211f99_GH0.tar.gz) = 897743 -SHA256 (glotzerlab-hipCUB-c70e193_GH0.tar.gz) = c9f132a8359e8ee3074f8f56b8070d9aa3c5d60eecea330529ed4020236d77fd -SIZE (glotzerlab-hipCUB-c70e193_GH0.tar.gz) = 110385 -SHA256 (mphowardlab-neighbor-ba0f068_GH0.tar.gz) = e21cef8dab85131d2cc5f2d1b49bd1030d27b9e24c2cde5f18fe57744faeb9a8 -SIZE (mphowardlab-neighbor-ba0f068_GH0.tar.gz) = 49050 -SHA256 (mphowardlab-hipper-b6da049_GH0.tar.gz) = b332ae31399ba972e1ac57428e92385291ba7f1100b2fb45ab2b7e77391d037f -SIZE (mphowardlab-hipper-b6da049_GH0.tar.gz) = 20201 +TIMESTAMP = 1733334979 +SHA256 (glotzerlab-hoomd-blue-v5.0.0_GH0.tar.gz) = 09a568d87eaa0af09a75512f8b5b2118d1f3f54dcbf89dbb9794b804a6193852 +SIZE (glotzerlab-hoomd-blue-v5.0.0_GH0.tar.gz) = 2768876 +SHA256 (glotzerlab-upp11-0c1fb8dfb4bcdc1c5c4eff9165539b15e70c4360_GH0.tar.gz) = 759695139bddae1d8a7cd52c967b856d6debf28fb37ea177f78c4434e2b210a8 +SIZE (glotzerlab-upp11-0c1fb8dfb4bcdc1c5c4eff9165539b15e70c4360_GH0.tar.gz) = 21058 +SHA256 (glotzerlab-nano-signal-slot-34223a4a7e97f8e114ef007e5360cf7a71265da3_GH0.tar.gz) = d15030482c82d9e4a99c2f67d8ef23b33cc318dd48ac0f8e804c6d4750f27ff4 +SIZE (glotzerlab-nano-signal-slot-34223a4a7e97f8e114ef007e5360cf7a71265da3_GH0.tar.gz) = 4748 +SHA256 (glotzerlab-quickhull-1ffbc6f884ea1da89e104a5996cf8a726db673d5_GH0.tar.gz) = 55c87e78bf990509ff35e3e039213ca6e3890ce988c2891647d65079696ae3a9 +SIZE (glotzerlab-quickhull-1ffbc6f884ea1da89e104a5996cf8a726db673d5_GH0.tar.gz) = 16242 +SHA256 (glotzerlab-HIP-d211f99eebb3637b6840f310f8797abb25012c18_GH0.tar.gz) = badcb27eb7d540a668877dd193aba529755d5f69c8e6411ee495668984640e5c +SIZE (glotzerlab-HIP-d211f99eebb3637b6840f310f8797abb25012c18_GH0.tar.gz) = 898870 +SHA256 (glotzerlab-hipCUB-c70e19332a8402049b3359b409e50220a759c42d_GH0.tar.gz) = f3dbd921ea8c5fe9068d6d9e6e9112c11c7e18488169ce48423d9fdb014536c6 +SIZE (glotzerlab-hipCUB-c70e19332a8402049b3359b409e50220a759c42d_GH0.tar.gz) = 110500 +SHA256 (mphowardlab-neighbor-ba0f06869b766066a7068852fa3b8c5fa746f71f_GH0.tar.gz) = 089129a1539d8e993f725017f1aadc60f9e40116e8a65dfbe70b0df9ac2d7cf3 +SIZE (mphowardlab-neighbor-ba0f06869b766066a7068852fa3b8c5fa746f71f_GH0.tar.gz) = 49039 +SHA256 (mphowardlab-hipper-b6da049a516ada03e4e1b66ca6b4c2c7c9668595_GH0.tar.gz) = c64a484884eaab3eb9fd8f7b27b144a7bfadfeab101e95d82bc2a6f7e4fb7cec +SIZE (mphowardlab-hipper-b6da049a516ada03e4e1b66ca6b4c2c7c9668595_GH0.tar.gz) = 20228 +SHA256 (glotzerlab-hoomd-examples-2710e2708877e375a56d2faa1df7d400b12d75a2_GH0.tar.gz) = 5d20f4b15cd785bc730a8b5ac10cb3f8632c5bbc088fc684223706576e31513c +SIZE (glotzerlab-hoomd-examples-2710e2708877e375a56d2faa1df7d400b12d75a2_GH0.tar.gz) = 5969219 +SHA256 (glotzerlab-OpenRAND-92dc12a23dff2d0aa3545f749d1c013677b9a87e_GH0.tar.gz) = a84657d9ac24083c1aef3d883927d5993270697af69a04f616227f9077eb8e19 +SIZE (glotzerlab-OpenRAND-92dc12a23dff2d0aa3545f749d1c013677b9a87e_GH0.tar.gz) = 298040 diff --git a/science/py-hoomd-blue/files/patch-hoomd_GPUFlags.h b/science/py-hoomd-blue/files/patch-hoomd_GPUFlags.h deleted file mode 100644 index 9b655f55b4af..000000000000 --- a/science/py-hoomd-blue/files/patch-hoomd_GPUFlags.h +++ /dev/null @@ -1,18 +0,0 @@ -Fix build with LLVM 19 - -/wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.9.0/hoomd/GPUFlags.h:160:27: -error: reference to non-static member function must be called - 160 | this->resetFlags(from.readFlags); - | ~~~~~^~~~~~~~~ - ---- hoomd/GPUFlags.h.orig 2024-10-31 16:09:15 UTC -+++ hoomd/GPUFlags.h -@@ -157,7 +157,7 @@ GPUFlags::GPUFlags(const GPUFlags& from) - memclear(); - - // copy over the data to the new GPUFlags -- this->resetFlags(from.readFlags); -+ this->resetFlags(from.readFlags()); - } - - template GPUFlags& GPUFlags::operator=(const GPUFlags& rhs) diff --git a/science/py-hoomd-blue/pkg-plist b/science/py-hoomd-blue/pkg-plist index 0aa294d0609f..422aef1db7a8 100644 --- a/science/py-hoomd-blue/pkg-plist +++ b/science/py-hoomd-blue/pkg-plist @@ -1,5 +1,4 @@ lib/cmake/hoomd/FindCUDALibs.cmake -lib/cmake/hoomd/FindTBB.cmake lib/cmake/hoomd/HOOMDHIPSetup.cmake lib/cmake/hoomd/hoomd-config-version.cmake lib/cmake/hoomd/hoomd-config.cmake @@ -7,7 +6,6 @@ lib/cmake/hoomd/hoomd-macros.cmake lib/cmake/hoomd/hoomd-targets-%%CMAKE_BUILD_TYPE%%.cmake lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/__init__.py -%%PYTHON_SITELIBDIR%%/hoomd/_compile.py %%PYTHON_SITELIBDIR%%/hoomd/_hoomd%%PYTHON_EXT_SUFFIX%%.so %%PYTHON_SITELIBDIR%%/hoomd/box.py %%PYTHON_SITELIBDIR%%/hoomd/communicator.py @@ -44,8 +42,8 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/hpmc/external/__init__.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/external/external.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/external/field.py +%%PYTHON_SITELIBDIR%%/hoomd/hpmc/external/harmonic.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/external/linear.py -%%PYTHON_SITELIBDIR%%/hoomd/hpmc/external/user.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/external/wall.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/integrate.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/nec/__init__.py @@ -60,17 +58,16 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/pair.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/step.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/union.py -%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/user.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/__init__.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/conftest.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_boxmc.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_boxmc_move_tuner.py -%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_clusters.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_compute_free_volume.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_compute_sdf.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_external_field.py -%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_external_user.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_external_wall.py +%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_gca.py +%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_kt.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_move_size_tuner.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_muvt.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_angular_step.py @@ -80,8 +77,6 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_opp.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_step.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_union.py -%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_union_user.py -%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_user.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_quick_compress.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_scale.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_shape.py @@ -127,13 +122,11 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/ForceConstraint.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GPUArray.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GPUFlags.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GPUPartition.cuh %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GPUVector.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GSD.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GSDDequeWriter.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GSDDumpWriter.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GSDReader.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GlobalArray.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/HOOMDMPI.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/HOOMDMath.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/HalfStepHook.h @@ -301,6 +294,12 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/HIP/tests/src/gcc/LaunchKernel.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/HIP/tests/src/runtimeApi/stream/hipStream.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/HIP/tests/src/test_common.h +%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/OpenRAND/include/openrand/base_state.h +%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/OpenRAND/include/openrand/philox.h +%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/OpenRAND/include/openrand/squares.h +%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/OpenRAND/include/openrand/threefry.h +%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/OpenRAND/include/openrand/tyche.h +%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/OpenRAND/include/openrand/util.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/_kiss_fft_guts.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/cudacpu_host_defines.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/cudacpu_vector_functions.h @@ -375,7 +374,6 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/hipper/tests/test_hipper.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/hipper/tools/FindCatch2.cmake %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/hipper/tools/Findhipper.cmake -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/jitify.hpp %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/kiss_fft.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/kiss_fftnd.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/nano-signal-slot/nano_function.hpp @@ -418,52 +416,6 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/quickhull/Structs/Vector3.hpp %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/quickhull/Structs/VertexDataSource.hpp %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/quickhull/Tests/QuickHullTests.hpp -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/examples/example_seeds.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/examples/pi_check.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/MicroURNG.hpp -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/ReinterpretCtr.hpp -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/aes.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/array.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/ars.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/boxmuller.hpp -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/conventional/Engine.hpp -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/conventional/gsl_cbrng.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/clangfeatures.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/compilerfeatures.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/fujitsufeatures.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/gccfeatures.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/iccfeatures.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/metalfeatures.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/msvcfeatures.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/nvccfeatures.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/open64features.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/openclfeatures.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/pgccfeatures.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/sse.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/sunprofeatures.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/features/xlcfeatures.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/gsl_microrng.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/philox.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/threefry.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/u01fixedpt.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/include/Random123/uniform.hpp -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/kat.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/kat_dev_execute.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/kat_main.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/rngNxW.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/time_initkeyctr.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/time_misc.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/time_random123.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/ut_uniform_IEEEkatvectors.hpp -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/ut_uniform_reference.hpp -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/util.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/util_cuda.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/util_demangle.hpp -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/util_expandtpl.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/util_m128.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/util_metal.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/util_opencl.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/random123/tests/util_print.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/triangle_triangle.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/upp11/upp11.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/filter/ParticleFilter.h @@ -481,7 +433,6 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ComputeFreeVolumeGPU.cuh %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ComputeFreeVolumeGPU.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ComputeSDF.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ExternalField.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ExternalFieldHarmonic.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ExternalFieldWall.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ExternalPotential.h @@ -495,12 +446,6 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMono.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPU.cuh %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPU.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPUDepletants.cuh -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPUDepletantsAuxilliaryPhase1.cuh -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPUDepletantsAuxilliaryPhase2.cuh -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPUDepletantsAuxilliaryTypes.cuh -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPUDepletantsTypes.cuh -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPUJIT.inc %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPUMoves.cuh %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPUTypes.cuh %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoNEC.h @@ -531,10 +476,9 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ShapeUtils.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/SphinxOverlap.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterBoxMC.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterClusters.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterClustersGPU.cuh -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterClustersGPU.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterClustersGPUDepletants.cuh +%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterGCA.h +%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterGCAGPU.cuh +%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterGCAGPU.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterMuVT.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterQuickCompress.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterShape.h @@ -707,8 +651,6 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/VolumeConservationMeshParameters.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/WallData.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/ZeroMomentumUpdater.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/metal/EAMForceCompute.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/metal/EAMForceComputeGPU.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/ATCollisionMethod.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/BlockForce.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/BounceBackNVE.h @@ -721,6 +663,7 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/CollisionMethod.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/Communicator.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/CommunicatorUtilities.h +%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/ConcentricCylindersGeometry.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/ConstantForce.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/CosineChannelGeometry.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/CosineExpansionContractionGeometry.h @@ -834,9 +777,6 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/md/tune/nlist_buffer.py %%PYTHON_SITELIBDIR%%/hoomd/md/update.py %%PYTHON_SITELIBDIR%%/hoomd/mesh.py -%%PYTHON_SITELIBDIR%%/hoomd/metal/__init__.py -%%PYTHON_SITELIBDIR%%/hoomd/metal/_metal%%PYTHON_EXT_SUFFIX%%.so -%%PYTHON_SITELIBDIR%%/hoomd/metal/pair.py %%PYTHON_SITELIBDIR%%/hoomd/mpcd/__init__.py %%PYTHON_SITELIBDIR%%/hoomd/mpcd/_mpcd%%PYTHON_EXT_SUFFIX%%.so %%PYTHON_SITELIBDIR%%/hoomd/mpcd/collide.py @@ -859,11 +799,6 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/mpcd/tune.py %%PYTHON_SITELIBDIR%%/hoomd/operation.py %%PYTHON_SITELIBDIR%%/hoomd/operations.py -%%PYTHON_SITELIBDIR%%/hoomd/pair_plugin/__init__.py -%%PYTHON_SITELIBDIR%%/hoomd/pair_plugin/_pair_plugin%%PYTHON_EXT_SUFFIX%%.so -%%PYTHON_SITELIBDIR%%/hoomd/pair_plugin/pair.py -%%PYTHON_SITELIBDIR%%/hoomd/pair_plugin/pytest/__init__.py -%%PYTHON_SITELIBDIR%%/hoomd/pair_plugin/pytest/test_example_pair.py %%PYTHON_SITELIBDIR%%/hoomd/pytest.ini %%PYTHON_SITELIBDIR%%/hoomd/pytest/__init__.py %%PYTHON_SITELIBDIR%%/hoomd/pytest/dummy.py @@ -901,11 +836,6 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/pytest/test_typeparam.py %%PYTHON_SITELIBDIR%%/hoomd/pytest/test_variant.py %%PYTHON_SITELIBDIR%%/hoomd/pytest_plugin_validate.py -%%PYTHON_SITELIBDIR%%/hoomd/shape_plugin/__init__.py -%%PYTHON_SITELIBDIR%%/hoomd/shape_plugin/_shape_plugin%%PYTHON_EXT_SUFFIX%%.so -%%PYTHON_SITELIBDIR%%/hoomd/shape_plugin/integrate.py -%%PYTHON_SITELIBDIR%%/hoomd/shape_plugin/pytest/__init__.py -%%PYTHON_SITELIBDIR%%/hoomd/shape_plugin/pytest/test_mysphere.py %%PYTHON_SITELIBDIR%%/hoomd/simulation.py %%PYTHON_SITELIBDIR%%/hoomd/snapshot.py %%PYTHON_SITELIBDIR%%/hoomd/state.py @@ -921,11 +851,6 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/update/custom_updater.py %%PYTHON_SITELIBDIR%%/hoomd/update/particle_filter.py %%PYTHON_SITELIBDIR%%/hoomd/update/remove_drift.py -%%PYTHON_SITELIBDIR%%/hoomd/updater_plugin/__init__.py -%%PYTHON_SITELIBDIR%%/hoomd/updater_plugin/_updater_plugin%%PYTHON_EXT_SUFFIX%%.so -%%PYTHON_SITELIBDIR%%/hoomd/updater_plugin/pytest/__init__.py -%%PYTHON_SITELIBDIR%%/hoomd/updater_plugin/pytest/test_example_updater.py -%%PYTHON_SITELIBDIR%%/hoomd/updater_plugin/update.py %%PYTHON_SITELIBDIR%%/hoomd/util.py %%PYTHON_SITELIBDIR%%/hoomd/variant/__init__.py %%PYTHON_SITELIBDIR%%/hoomd/variant/box.py