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8d2198bb6d
GFF/GTF utility providing format conversions, filtering, FASTA sequence extraction and more.
68 lines
1.9 KiB
Text
68 lines
1.9 KiB
Text
--- Makefile.orig 2021-07-23 14:21:36 UTC
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+++ Makefile
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@@ -1,11 +1,11 @@
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-GCLDIR := $(if $(GCLDIR),$(GCLDIR),../gclib)
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+GCLDIR := $(if $(GCLDIR),$(GCLDIR),gclib)
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SEARCHDIRS := -I. -I${GCLDIR}
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SYSTYPE := $(shell uname)
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CXX := $(if $(CXX),$(CXX),g++)
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-LINKER := $(if $(LINKER),$(LINKER),g++)
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+LINKER := $(if $(LINKER),$(LINKER),${CXX})
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LDFLAGS := $(if $(LDFLAGS),$(LDFLAGS),-g)
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@@ -15,7 +15,7 @@ BASEFLAGS := -Wall -Wextra -std=c++11 ${SEARCHDIRS} -
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GCCV8 := $(shell expr `${CXX} -dumpversion | cut -f1 -d.` \>= 8)
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ifeq "$(GCCV8)" "1"
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- BASEFLAGS += -Wno-class-memaccess
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+ # BASEFLAGS += -Wno-class-memaccess
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endif
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CXXFLAGS := $(if $(CXXFLAGS),$(BASEFLAGS) $(CXXFLAGS),$(BASEFLAGS))
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@@ -33,7 +33,7 @@ else #debug builds
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LDFLAGS += -pg
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else
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#CXXFLAGS += -g -O0 -DNDEBUG
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- CXXFLAGS += -g -O0 -DDEBUG -D_DEBUG -DGDEBUG
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+ #CXXFLAGS += -g -O0 -DDEBUG -D_DEBUG -DGDEBUG
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endif
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ifneq (,$(filter %memcheck %memdebug, $(MAKECMDGOALS)))
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#use sanitizer in gcc 4.9+
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@@ -79,11 +79,8 @@ OBJS := ${GCLDIR}/GBase.o ${GCLDIR}/GArgs.o ${GCLDIR}/
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.PHONY : all
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-all static release debug memcheck memdebug profile gprof prof: ../gclib gffread
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+all static release debug memcheck memdebug profile gprof prof: ${GCLDIR} gffread
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-../gclib:
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- git clone https://github.com/gpertea/gclib.git ../gclib
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-
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$(OBJS) : $(GCLDIR)/GBase.h $(GCLDIR)/gff.h
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gffread.o : gff_utils.h $(GCLDIR)/GBase.h $(GCLDIR)/gff.h
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gff_utils.o : gff_utils.h $(GCLDIR)/gff.h
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@@ -97,9 +94,19 @@ gffread: $(OBJS) gffread.o
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# target for removing all object files
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-.PHONY : clean
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+.PHONY : clean install install-strip
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+
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clean:
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@${RM} gffread gffread.o* gffread.exe $(OBJS)
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@${RM} core.*
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+INSTALL ?= install
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+STRIP ?= strip
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+PREFIX ?= /usr/local
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+DESTDIR ?= .
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+install:
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+ ${INSTALL} -c gffread ${DESTDIR}${PREFIX}/bin
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+
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+install-strip: install
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+ ${STRIP} ${DESTDIR}${PREFIX}/bin/gffread
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