ports/biology/mmseqs2/files/patch-data_workflow_createtaxdb.sh
Jason W. Bacon 4fd08b5074 biology/mmseqs2: Update to 16.747.c6
Numerous fixes and improvements since v13
Changes: https://github.com/soedinglab/MMseqs2/releases

PR:             283251
Reported by:    alster@vinterdalen.se
2025-01-15 09:06:03 -06:00

21 lines
830 B
Bash

--- data/workflow/createtaxdb.sh.orig 2024-12-11 10:27:07 UTC
+++ data/workflow/createtaxdb.sh
@@ -27,6 +27,8 @@ if hasCommand wget; then STRATEGY="$STRATEGY WGET";
if hasCommand aria2c; then STRATEGY="$STRATEGY ARIA"; fi
if hasCommand curl; then STRATEGY="$STRATEGY CURL"; fi
if hasCommand wget; then STRATEGY="$STRATEGY WGET"; fi
+# Part of FreeBSD base, need not be installed separately
+if hasCommand fetch; then STRATEGY="$STRATEGY FETCH"; fi
if [ "$STRATEGY" = "" ]; then
fail "No download tool found in PATH. Please install aria2c, curl or wget."
fi
@@ -56,6 +58,9 @@ downloadFile() {
mv -f -- "${OUTPUT}.wget" "${OUTPUT}"
return 0
fi
+ ;;
+ FETCH)
+ fetch -o "$OUTPUT" "$URL" && return 0
;;
esac
done