If you do a major upgrade of Icinga 2 and use a database, please see http://docs.icinga.org/icinga2/latest/doc/module/icinga2/chapter/upgrading-icinga-2 how to upgrade the database. To rotate Icinga 2's logfiles, you can copy %%EXAMPLESDIR%%/newsyslog/icinga2 to %%LOCALBASE%%/etc/newsyslog.conf.d/