Commit graph

6 commits

Author SHA1 Message Date
Jason W. Bacon
300dbd1c83 biology/vcf-split: Update to 0.1.3.3
Transfer header from multi-sample input
Updates for evolving libxtend and biolibc APIs
Add --version flag
Numerous minor fixes and enhancements
2021-12-14 13:45:32 -06:00
Jason W. Bacon
61ebfe4137 biology/vcf-split: Update to 0.1.2.14
Updates for libxtend and biolibc API changes
2021-08-27 20:30:52 -05:00
Jason W. Bacon
f2ef77c8ce biology/vcf-split: Update to 0.1.2
Updates for new biolibc API

Changes:        https://github.com/auerlab/vcf-split/releases
2021-06-11 10:05:19 -05:00
Mathieu Arnold
cf118ccf87
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
2021-04-07 10:09:01 +02:00
Mathieu Arnold
305f148f48
Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
Jason W. Bacon
5a899ba8ed biology/vcf-split: Split a multi-sample VCF into single-sample VCFs
Vcf-split splits a multi-sample VCF into single-sample VCFs, writing thousands
of output files simultaneously.  Parsing the TOPMed human chromosome 1 BCF
with bcftools takes two days, so extracting the 137,977 samples one at a time
or using thousands of parallel readers of the same file is impractical.
Vcf-split solves this by generating thousands of single-sample outputs during
a single sweep through the multi-sample input.
2021-03-21 15:17:27 +00:00