creating /tmp/tmp2txkG8/tmp
creating /tmp/tmp2txkG8/tmp/tmp2txkG8
compile options: '-I/usr/include -I/usr/local/include -I/usr/local/include/suitesparse -c'
cc: /tmp/tmp2txkG8/source.c
cc /tmp/tmp2txkG8/tmp/tmp2txkG8/source.o -L/usr/local/lib -lcblas -o /tmp/tmp2txkG8/a.out
/usr/local/lib/libcblas.so: undefined reference to `cgemv_'
/usr/local/lib/libcblas.so: undefined reference to `cscal_'
/usr/local/lib/libcblas.so: undefined reference to `sdot_'
/usr/local/lib/libcblas.so: undefined reference to `dtrmm_'
/usr/local/lib/libcblas.so: undefined reference to `zhpr_'
/usr/local/lib/libcblas.so: undefined reference to `snrm2_'
/usr/local/lib/libcblas.so: undefined reference to `zherk_'
/usr/local/lib/libcblas.so: undefined reference to `sspmv_'
/usr/local/lib/libcblas.so: undefined reference to `cswap_'
/usr/local/lib/libcblas.so: undefined reference to `dswap_'
/usr/local/lib/libcblas.so: undefined reference to `dgemm_'
/usr/local/lib/libcblas.so: undefined reference to `ztrmv_'
/usr/local/lib/libcblas.so: undefined reference to `zgbmv_'
/usr/local/lib/libcblas.so: undefined reference to `ctbsv_'
/usr/local/lib/libcblas.so: undefined reference to `dger_'
/usr/local/lib/libcblas.so: undefined reference to `dtpsv_'
/usr/local/lib/libcblas.so: undefined reference to `sspr_'
/usr/local/lib/libcblas.so: undefined reference to `cher_'
/usr/local/lib/libcblas.so: undefined reference to `caxpy_'
/usr/local/lib/libcblas.so: undefined reference to `ztpsv_'
/usr/local/lib/libcblas.so: undefined reference to `zscal_'
/usr/local/lib/libcblas.so: undefined reference to `sswap_'
/usr/local/lib/libcblas.so: undefined reference to `ctpsv_'
/usr/local/lib/libcblas.so: undefined reference to `dzasum_'
/usr/local/lib/libcblas.so: undefined reference to `daxpy_'
/usr/local/lib/libcblas.so: undefined reference to `ctrsv_'
/usr/local/lib/libcblas.so: undefined reference to `izamax_'
/usr/local/lib/libcblas.so: undefined reference to `sasum_'
/usr/local/lib/libcblas.so: undefined reference to `drotg_'
/usr/local/lib/libcblas.so: undefined reference to `dsymm_'
/usr/local/lib/libcblas.so: undefined reference to `zhpr2_'
/usr/local/lib/libcblas.so: undefined reference to `stpsv_'
/usr/local/lib/libcblas.so: undefined reference to `ssbmv_'
/usr/local/lib/libcblas.so: undefined reference to `cgbmv_'
/usr/local/lib/libcblas.so: undefined reference to `zhbmv_'
/usr/local/lib/libcblas.so: undefined reference to `srotmg_'
/usr/local/lib/libcblas.so: undefined reference to `cgemm_'
/usr/local/lib/libcblas.so: undefined reference to `dtpmv_'
/usr/local/lib/libcblas.so: undefined reference to `chemv_'
/usr/local/lib/libcblas.so: undefined reference to `ssyr2_'
/usr/local/lib/libcblas.so: undefined reference to `ctbmv_'
/usr/local/lib/libcblas.so: undefined reference to `saxpy_'
/usr/local/lib/libcblas.so: undefined reference to `drotm_'
/usr/local/lib/libcblas.so: undefined reference to `dnrm2_'
/usr/local/lib/libcblas.so: undefined reference to `ctrmm_'
/usr/local/lib/libcblas.so: undefined reference to `ztbsv_'
/usr/local/lib/libcblas.so: undefined reference to `dtrsv_'
/usr/local/lib/libcblas.so: undefined reference to `zdotu_'
/usr/local/lib/libcblas.so: undefined reference to `dsyr_'
/usr/local/lib/libcblas.so: undefined reference to `srot_'
/usr/local/lib/libcblas.so: undefined reference to `ccopy_'
/usr/local/lib/libcblas.so: undefined reference to `zgeru_'
/usr/local/lib/libcblas.so: undefined reference to `zhpmv_'
/usr/local/lib/libcblas.so: undefined reference to `csyr2k_'
/usr/local/lib/libcblas.so: undefined reference to `ctrsm_'
/usr/local/lib/libcblas.so: undefined reference to `sscal_'
/usr/local/lib/libcblas.so: undefined reference to `cgerc_'
/usr/local/lib/libcblas.so: undefined reference to `dcopy_'
/usr/local/lib/libcblas.so: undefined reference to `scnrm2_'
/usr/local/lib/libcblas.so: undefined reference to `zgemm_'
/usr/local/lib/libcblas.so: undefined reference to `sgbmv_'
/usr/local/lib/libcblas.so: undefined reference to `sspr2_'
/usr/local/lib/libcblas.so: undefined reference to `ztrsv_'
/usr/local/lib/libcblas.so: undefined reference to `cgeru_'
/usr/local/lib/libcblas.so: undefined reference to `dscal_'
/usr/local/lib/libcblas.so: undefined reference to `dgbmv_'
/usr/local/lib/libcblas.so: undefined reference to `chpr_'
/usr/local/lib/libcblas.so: undefined reference to `zdscal_'
/usr/local/lib/libcblas.so: undefined reference to `strmm_'
/usr/local/lib/libcblas.so: undefined reference to `ssymm_'
/usr/local/lib/libcblas.so: undefined reference to `zgemv_'
/usr/local/lib/libcblas.so: undefined reference to `ddot_'
/usr/local/lib/libcblas.so: undefined reference to `isamax_'
/usr/local/lib/libcblas.so: undefined reference to `drotmg_'
/usr/local/lib/libcblas.so: undefined reference to `zsyrk_'
/usr/local/lib/libcblas.so: undefined reference to `stbsv_'
/usr/local/lib/libcblas.so: undefined reference to `strsv_'
/usr/local/lib/libcblas.so: undefined reference to `scasum_'
/usr/local/lib/libcblas.so: undefined reference to `srotg_'
/usr/local/lib/libcblas.so: undefined reference to `sdsdot_'
/usr/local/lib/libcblas.so: undefined reference to `sgemm_'
/usr/local/lib/libcblas.so: undefined reference to `scopy_'
/usr/local/lib/libcblas.so: undefined reference to `zdotc_'
/usr/local/lib/libcblas.so: undefined reference to `dsyr2k_'
/usr/local/lib/libcblas.so: undefined reference to `dsyrk_'
/usr/local/lib/libcblas.so: undefined reference to `csscal_'
/usr/local/lib/libcblas.so: undefined reference to `dasum_'
/usr/local/lib/libcblas.so: undefined reference to `ssyr_'
/usr/local/lib/libcblas.so: undefined reference to `ssyr2k_'
/usr/local/lib/libcblas.so: undefined reference to `dspr2_'
/usr/local/lib/libcblas.so: undefined reference to `zher2_'
/usr/local/lib/libcblas.so: undefined reference to `dtrsm_'
/usr/local/lib/libcblas.so: undefined reference to `idamax_'
/usr/local/lib/libcblas.so: undefined reference to `dtbsv_'
/usr/local/lib/libcblas.so: undefined reference to `ctrmv_'
/usr/local/lib/libcblas.so: undefined reference to `strmv_'
/usr/local/lib/libcblas.so: undefined reference to `zaxpy_'
/usr/local/lib/libcblas.so: undefined reference to `zher_'
/usr/local/lib/libcblas.so: undefined reference to `ssymv_'
/usr/local/lib/libcblas.so: undefined reference to `zhemm_'
/usr/local/lib/libcblas.so: undefined reference to `dtrmv_'
/usr/local/lib/libcblas.so: undefined reference to `zgerc_'
/usr/local/lib/libcblas.so: undefined reference to `chemm_'
/usr/local/lib/libcblas.so: undefined reference to `zher2k_'
/usr/local/lib/libcblas.so: undefined reference to `ztpmv_'
/usr/local/lib/libcblas.so: undefined reference to `zswap_'
/usr/local/lib/libcblas.so: undefined reference to `dspmv_'
/usr/local/lib/libcblas.so: undefined reference to `zsymm_'
/usr/local/lib/libcblas.so: undefined reference to `ztrmm_'
/usr/local/lib/libcblas.so: undefined reference to `dtbmv_'
/usr/local/lib/libcblas.so: undefined reference to `dgemv_'
/usr/local/lib/libcblas.so: undefined reference to `sgemv_'
/usr/local/lib/libcblas.so: undefined reference to `chpr2_'
/usr/local/lib/libcblas.so: undefined reference to `cdotu_'
/usr/local/lib/libcblas.so: undefined reference to `ctpmv_'
/usr/local/lib/libcblas.so: undefined reference to `cher2k_'
/usr/local/lib/libcblas.so: undefined reference to `csymm_'
/usr/local/lib/libcblas.so: undefined reference to `ztrsm_'
/usr/local/lib/libcblas.so: undefined reference to `cherk_'
/usr/local/lib/libcblas.so: undefined reference to `cdotc_'
/usr/local/lib/libcblas.so: undefined reference to `dsbmv_'
/usr/local/lib/libcblas.so: undefined reference to `csyrk_'
/usr/local/lib/libcblas.so: undefined reference to `stpmv_'
/usr/local/lib/libcblas.so: undefined reference to `chpmv_'
/usr/local/lib/libcblas.so: undefined reference to `sger_'
/usr/local/lib/libcblas.so: undefined reference to `cher2_'
/usr/local/lib/libcblas.so: undefined reference to `zsyr2k_'
/usr/local/lib/libcblas.so: undefined reference to `strsm_'
/usr/local/lib/libcblas.so: undefined reference to `dznrm2_'
/usr/local/lib/libcblas.so: undefined reference to `stbmv_'
/usr/local/lib/libcblas.so: undefined reference to `chbmv_'
/usr/local/lib/libcblas.so: undefined reference to `dsyr2_'
/usr/local/lib/libcblas.so: undefined reference to `dsdot_'
/usr/local/lib/libcblas.so: undefined reference to `zcopy_'
/usr/local/lib/libcblas.so: undefined reference to `dspr_'
/usr/local/lib/libcblas.so: undefined reference to `icamax_'
/usr/local/lib/libcblas.so: undefined reference to `dsymv_'
/usr/local/lib/libcblas.so: undefined reference to `zhemv_'
/usr/local/lib/libcblas.so: undefined reference to `ssyrk_'
/usr/local/lib/libcblas.so: undefined reference to `srotm_'
/usr/local/lib/libcblas.so: undefined reference to `drot_'
/usr/local/lib/libcblas.so: undefined reference to `ztbmv_'
cc: error: linker command failed with exit code 1 (use -v to see invocation)
cc /tmp/tmp2txkG8/tmp/tmp2txkG8/source.o -L/usr/local/lib -lblas -o /tmp/tmp2txkG8/a.out
/tmp/tmp2txkG8/tmp/tmp2txkG8/source.o: In function `main':
source.c:(.text+0x5c): undefined reference to `cblas_ddot'
cc: error: linker command failed with exit code 1 (use -v to see invocation)
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "setup.py", line 163, in <module>
setup_package()
File "setup.py", line 153, in setup_package
configuration=configuration,
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/core.py", line 137, in setup
config = configuration()
File "setup.py", line 62, in configuration
config.add_subpackage('pysparse')
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 1036, in add_subpackage
caller_level = 2)
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 1005, in get_subpackage
caller_level = caller_level + 1)
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 942, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "pysparse/setup.py", line 11, in configuration
config.add_subpackage('sparse')
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 1036, in add_subpackage
caller_level = 2)
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 1005, in get_subpackage
caller_level = caller_level + 1)
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 942, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "pysparse/sparse/setup.py", line 19, in configuration
blas_info = get_info('blas_opt',0)
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py", line 448, in get_info
return cl().get_info(notfound_action)
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py", line 641, in get_info
self.calc_info()
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py", line 1661, in calc_info
blas_info = get_info('blas')
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py", line 448, in get_info
return cl().get_info(notfound_action)
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py", line 641, in get_info
self.calc_info()
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py", line 1697, in calc_info
lib = self.has_cblas(info)
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py", line 1740, in has_cblas
extra_postargs=info.get('extra_link_args', []))
File "/usr/local/lib/python2.7/distutils/ccompiler.py", line 700, in link_executable
debug, extra_preargs, extra_postargs, None, target_lang)
File "/usr/local/lib/python2.7/distutils/unixccompiler.py", line 202, in link
raise LinkError, msg
distutils.errors.LinkError: Command "cc /tmp/tmp2txkG8/tmp/tmp2txkG8/source.o -L/usr/local/lib -lblas -o /tmp/tmp2txkG8/a.out" failed with exit status 1
PR: 240937
Reported by: pkg-fallout
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.
This includes ports
- featuring USE_GCC=yes or USE_GCC=any,
- featuring USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and those
- with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.
PR: 222542
Ports using USE_PYTHON=distutils are now flavored. They will
automatically get flavors (py27, py34, py35, py36) depending on what
versions they support.
There is also a USE_PYTHON=flavors for ports that do not use distutils
but need FLAVORS to be set. A USE_PYTHON=noflavors can be set if
using distutils but flavors are not wanted.
A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
added to cope with Python ports that did not have the Python
PKGNAMEPREFIX but are flavored.
USES=python now also exports a PY_FLAVOR variable that contains the
current python flavor. It can be used in dependency lines when the
port itself is not python flavored. For example, deskutils/calibre.
By default, all the flavors are generated. To only generate flavors
for the versions in PYTHON2_DEFAULT and PYTHON3_DEFAULT, define
BUILD_DEFAULT_PYTHON_FLAVORS in your make.conf.
In all the ports with Python dependencies, the *_DEPENDS entries MUST
end with the flavor so that the framework knows which to build/use.
This is done by appending '@${PY_FLAVOR}' after the origin (or
@${FLAVOR} if in a Python module with Python flavors, as the content
will be the same). For example:
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR}
PR: 223071
Reviewed by: portmgr, python
Sponsored by: Absolight
Differential Revision: https://reviews.freebsd.org/D12464
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
c++14-lang, c++0x, c11, or gcc-c++11-lib.
PR: 219275
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using using Mk/bsd.octave.mk which in turn has USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
c++11-lang, c++0x, c11, or gcc-c++11-lib.
PR: 216707
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.
The first part covered ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.
This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.
PR: 214965
Reported by: thierry
PR: 210595
Submitted by: yuri@rawbw.com
PySparse extends the Python interpreter by a set of sparse matrix
types holding double precision values. PySparse also includes modules
that implement:
- iterative methods for solving linear systems of equations
- a set of standard preconditioners
- an interface to a direct solver for sparse linear systems of
equations (SuperLU)
- a Jacobi-Davidson eigenvalue solver for the symmetric, generalised
matrix eigenvalue problem (JDSYM)
https://github.com/PythonOptimizers/pysparse
