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math/moab: Update 4.6.3 -> 5.0.0

Browse source 
Port changes:
* Change MASTER_SITES to bitbucket where official releases are
* Change to CMAKE
* Add MPI option
* Fix WWW

Reported by:	portscout
This commit is contained in:
Yuri Victorovich 2018-11-24 03:10:29 +00:00
parent 639192571f
commit ed411ada6f
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=485723
8 changed files with 74 additions and 99 deletions
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26
math/moab/Makefile
View file

@ -1,9 +1,9 @@
# $FreeBSD$
PORTNAME= moab
DISTVERSION= 4.6.3
DISTVERSION= 5.0.0
CATEGORIES= math
MASTER_SITES= http://ftp.mcs.anl.gov/pub/fathom/
MASTER_SITES= https://bitbucket.org/${BB_ACCOUNT}/${BB_PROJECT}/get/${BB_COMMIT}.tar.gz?dummy=/
MAINTAINER= yuri@FreeBSD.org
COMMENT= Component for representing and evaluating mesh data
@ -12,15 +12,25 @@ LICENSE= BSD2CLAUSE
xLICENSE_FILE= ${WRKSRC}/LICENSE.txt
LIB_DEPENDS= libhdf5.so:science/hdf5 \
libnetcdf.so:science/netcdf
libnetcdf.so:science/netcdf \
libopenblas.so:math/openblas
USES= autoreconf gmake libtool localbase:ldflags
GNU_CONFIGURE= yes
CONFIGURE_ARGS= --disable-static --with-netcdf=${LOCALBASE}
USES= cmake:outsource,noninja eigen:3 fortran
USE_LDCONFIG= yes
OPTIONS_DEFINE= DOCS
CMAKE_ARGS= -DBLAS_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so -DLAPACK_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so
PORTDOCS= *
BB_ACCOUNT= fathomteam
BB_PROJECT= ${PORTNAME}
BB_COMMIT= c4eed56fd6d2
WRKSRC= ${WRKDIR}/${BB_ACCOUNT}-${BB_PROJECT}-${BB_COMMIT}
OPTIONS_DEFINE= MPI
OPTIONS_DEFAULT= MPI
OPTIONS_SUB= yes
MPI_CMAKE_BOOL= ENABLE_MPI
MPI_LIB_DEPENDS= libmpi.so:net/openmpi
.include <bsd.port.mk>

6
math/moab/distinfo
View file

@ -1,3 +1,3 @@
TIMESTAMP = 1541374760
SHA256 (moab-4.6.3.tar.gz) = a25933254a05013811d3769e5d96b01cc7b5d67026acacbaae4f3568ce18fd7f
SIZE (moab-4.6.3.tar.gz) = 21861257
TIMESTAMP = 1543026884
SHA256 (moab-5.0.0.tar.gz) = 80fd376e71bc40b1cdf1c5ebd9c14e8cfe185e7554ff352431cbcb82a44920e3
SIZE (moab-5.0.0.tar.gz) = 12370425

12
math/moab/files/patch-configure.ac
View file

@ -1,12 +0,0 @@
--- configure.ac.orig 2018-11-05 00:30:52 UTC
+++ configure.ac
@@ -31,7 +31,8 @@ LIBS="$LIBS -lm"
AC_PROG_LN_S
AC_PROG_MAKE_SET
-AC_DISABLE_SHARED
+AC_ENABLE_SHARED
+AC_DISABLE_STATIC
AC_PROG_LIBTOOL
FATHOM_COMPILER_FLAGS
m4_ifdef([AM_SILENT_RULES],[

11
math/moab/files/patch-src_io_NCHelper.cpp
View file

@ -1,11 +0,0 @@
--- src/io/NCHelper.cpp.orig 2018-11-05 01:48:41 UTC
+++ src/io/NCHelper.cpp
@@ -714,7 +714,7 @@ ErrorCode NCHelper::get_tag_to_set(ReadN
rval = mbImpl->tag_get_handle(tag_name.str().c_str(), 0, MB_TYPE_INTEGER, tagh, MB_TAG_CREAT | MB_TAG_SPARSE | MB_TAG_VARLEN);
break;
default:
- std::cerr << "Unrecognized data type for tag " << tag_name << std::endl;
+ std::cerr << "Unrecognized data type for tag " << tag_name.str() << std::endl;
rval = MB_FAILURE;
}

11
math/moab/files/patch-src_io_ReadABAQUS.cpp
View file

@ -1,11 +0,0 @@
--- src/io/ReadABAQUS.cpp.orig 2018-11-04 23:41:08 UTC
+++ src/io/ReadABAQUS.cpp
@@ -105,7 +105,7 @@ void ReadABAQUS::reset()
ReadABAQUS::~ReadABAQUS()
{
mdbImpl->release_interface(readMeshIface);
- if (NULL != abFile)
+ if (abFile.is_open())
abFile.close();
}

8
math/moab/files/patch-src_io_WriteNCDF.cpp
View file

@ -1,13 +1,13 @@
--- src/io/WriteNCDF.cpp.orig 2018-11-05 01:47:40 UTC
--- src/io/WriteNCDF.cpp.orig 2018-11-23 06:26:09 UTC
+++ src/io/WriteNCDF.cpp
@@ -154,8 +154,8 @@ void WriteNCDF::time_and_date(char* time
@@ -161,8 +161,8 @@ void WriteNCDF::time_and_date(char* time
strftime(date_string, TIME_STR_LEN, "%m/%d/%Y", local_time);
// terminate with NULL character
// Terminate with NULL character
- time_string[10] = (char)NULL;
- date_string[10] = (char)NULL;
+ time_string[10] = (char)0;
+ date_string[10] = (char)0;
}
ErrorCode WriteNCDF::write_file(const char *exodus_file_name,
ErrorCode WriteNCDF::write_file(const char *exodus_file_name,

2
math/moab/pkg-descr
View file

@ -12,4 +12,4 @@ provenance information for the mesh. Because the data model used in MOAB is so
abstract, conventions are useful for describing how meta-data is stored into
that data model.
WWW: http://sigma.mcs.anl.gov/moab-library/
WWW: https://press3.mcs.anl.gov/sigma/moab-library/

97
math/moab/pkg-plist
View file

@ -1,54 +1,31 @@
bin/dagmc_preproc
bin/h5minfo
bin/h5mvalidate
bin/hexmodops
bin/mbconvert
bin/mbdepth
bin/mbgsets
bin/mbhonodes
bin/mbmem
bin/mbquality
bin/mbsize
bin/mbskin
bin/mbslavepart
bin/mbsurfplot
bin/mbtagprop
bin/spheredecomp
include/DagMC.hpp
include/MBAdaptiveKDTree.hpp
include/MBBSPTree.hpp
include/MBBSPTreePoly.hpp
bin/mbumr
%%MPI%%include/Coupler.hpp
%%MPI%%include/ElemUtil.hpp
include/MBCN.h
include/MBCN.hpp
include/MBCN_protos.h
include/MBCartVect.hpp
include/MBCore.hpp
include/MBEntityHandle.h
include/MBEntityType.h
include/MBForward.hpp
include/MBGeomUtil.hpp
include/MBInterface.hpp
include/MBOrientedBoxTreeTool.hpp
include/MBParallelComm.hpp
include/MBParallelData.hpp
include/MBProcConfig.hpp
include/MBRange.hpp
include/MBReadUtilIface.hpp
include/MBReaderIface.hpp
include/MBReaderWriterSet.hpp
include/MBSkinner.hpp
%%MPI%%include/MBParallelConventions.h
include/MBTagConventions.hpp
include/MBTypes.h
include/MBUnknownInterface.hpp
include/MBUtil.hpp
include/MBVersion.h
include/MBWriteUtilIface.hpp
include/MBWriterIface.hpp
include/MBiMesh.hpp
include/MBmpi.h
include/MOAB_FCDefs.h
include/iBase.h
include/iBase_f.h
include/iMesh.h
%%MPI%%include/iMeshP.h
%%MPI%%include/iMeshP_f.h
%%MPI%%include/iMeshP_protos.h
include/iMesh_extensions.h
include/iMesh_extensions_protos.h
include/iMesh_f.h
include/iMesh_protos.h
include/moab/AdaptiveKDTree.hpp
@ -66,27 +43,44 @@ include/moab/ElemEvaluator.hpp
include/moab/EntityHandle.hpp
include/moab/EntityType.hpp
include/moab/Error.hpp
include/moab/ErrorHandler.hpp
include/moab/ExoIIInterface.hpp
include/moab/FBEngine.hpp
include/moab/FileOptions.hpp
include/moab/FindPtFuncs.h
include/moab/Forward.hpp
include/moab/GeomQueryTool.hpp
include/moab/GeomTopoTool.hpp
include/moab/GeomUtil.hpp
include/moab/HalfFacetRep.hpp
include/moab/HigherOrderFactory.hpp
include/moab/HomXform.hpp
include/moab/Interface.hpp
include/moab/LinearHex.hpp
include/moab/LinearQuad.hpp
include/moab/LinearTet.hpp
include/moab/LinearTri.hpp
include/moab/IntxMesh/Intx2Mesh.hpp
include/moab/IntxMesh/Intx2MeshInPlane.hpp
include/moab/IntxMesh/Intx2MeshOnSphere.hpp
include/moab/IntxMesh/IntxRllCssphere.hpp
include/moab/IntxMesh/IntxUtils.hpp
include/moab/LloydSmoother.hpp
include/moab/LocalDiscretization/LinearHex.hpp
include/moab/LocalDiscretization/LinearQuad.hpp
include/moab/LocalDiscretization/LinearTet.hpp
include/moab/LocalDiscretization/LinearTri.hpp
include/moab/LocalDiscretization/QuadraticHex.hpp
include/moab/MOABConfig.h
include/moab/Matrix3.hpp
include/moab/MergeMesh.hpp
include/moab/MeshGeneration.hpp
include/moab/MeshTopoUtil.hpp
include/moab/NestedRefine.hpp
include/moab/NestedRefineTemplates.hpp
include/moab/OrientedBox.hpp
include/moab/OrientedBoxTreeTool.hpp
%%MPI%%include/moab/ParallelComm.hpp
%%MPI%%include/moab/ParallelData.hpp
%%MPI%%include/moab/ParallelMergeMesh.hpp
%%MPI%%include/moab/ProcConfig.hpp
include/moab/ProgOptions.hpp
include/moab/QuadraticHex.hpp
include/moab/Range.hpp
include/moab/RangeMap.hpp
include/moab/ReadUtilIface.hpp
@ -105,9 +99,12 @@ include/moab/TupleList.hpp
include/moab/Types.hpp
include/moab/UnknownInterface.hpp
include/moab/Util.hpp
include/moab/Version.h
include/moab/VtkUtil.hpp
include/moab/WriteUtilIface.hpp
include/moab/WriterIface.hpp
%%MPI%%include/moab/gs.hpp
include/moab/iMOAB.h
include/moab/mhdf_public.h
include/moab/point_locater/element_maps/linear_hex_map.hpp
include/moab/point_locater/element_maps/linear_tet_map.hpp
include/moab/point_locater/element_maps/quadratic_hex_map.hpp
@ -118,17 +115,19 @@ include/moab/point_locater/point_locater.hpp
include/moab/point_locater/tree/bvh_tree.hpp
include/moab/point_locater/tree/common_tree.hpp
include/moab/point_locater/tree/element_tree.hpp
lib/MOABConfig.cmake
include/moab/verdict.h
include/moab/verdict/VerdictWrapper.hpp
%%MPI%%include/moab_mpi.h
%%MPI%%include/moab_mpi_config.h
lib/cmake/MOAB/MOABConfig.cmake
lib/cmake/MOAB/MOABTargets-%%CMAKE_BUILD_TYPE%%.cmake
lib/cmake/MOAB/MOABTargets.cmake
lib/iMesh-Defs.inc
lib/libMOAB.so
lib/libMOAB.so.0
lib/libMOAB.so.0.0.0
lib/libdagmc.so
lib/libdagmc.so.0
lib/libdagmc.so.0.0.0
lib/libMOAB.so.5
lib/libMOAB.so.5.0.0
lib/libiMesh.so
lib/libiMesh.so.0
lib/libiMesh.so.0.0.0
lib/moab.config
lib/libiMesh.so.5
lib/libiMesh.so.5.0.0
%%MPI%%lib/libmbcoupler.so
lib/moab.make
man/man1/mbconvert.1.gz