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math/moab: Update 4.6.3 -> 5.0.0
Port changes: * Change MASTER_SITES to bitbucket where official releases are * Change to CMAKE * Add MPI option * Fix WWW Reported by: portscout
This commit is contained in:
parent
639192571f
commit
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Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=485723
8 changed files with 74 additions and 99 deletions
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@ -1,9 +1,9 @@
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# $FreeBSD$
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PORTNAME= moab
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DISTVERSION= 4.6.3
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DISTVERSION= 5.0.0
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CATEGORIES= math
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MASTER_SITES= http://ftp.mcs.anl.gov/pub/fathom/
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MASTER_SITES= https://bitbucket.org/${BB_ACCOUNT}/${BB_PROJECT}/get/${BB_COMMIT}.tar.gz?dummy=/
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MAINTAINER= yuri@FreeBSD.org
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COMMENT= Component for representing and evaluating mesh data
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@ -12,15 +12,25 @@ LICENSE= BSD2CLAUSE
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xLICENSE_FILE= ${WRKSRC}/LICENSE.txt
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LIB_DEPENDS= libhdf5.so:science/hdf5 \
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libnetcdf.so:science/netcdf
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libnetcdf.so:science/netcdf \
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libopenblas.so:math/openblas
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USES= autoreconf gmake libtool localbase:ldflags
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GNU_CONFIGURE= yes
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CONFIGURE_ARGS= --disable-static --with-netcdf=${LOCALBASE}
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USES= cmake:outsource,noninja eigen:3 fortran
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USE_LDCONFIG= yes
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OPTIONS_DEFINE= DOCS
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CMAKE_ARGS= -DBLAS_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so -DLAPACK_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so
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PORTDOCS= *
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BB_ACCOUNT= fathomteam
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BB_PROJECT= ${PORTNAME}
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BB_COMMIT= c4eed56fd6d2
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WRKSRC= ${WRKDIR}/${BB_ACCOUNT}-${BB_PROJECT}-${BB_COMMIT}
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OPTIONS_DEFINE= MPI
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OPTIONS_DEFAULT= MPI
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OPTIONS_SUB= yes
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MPI_CMAKE_BOOL= ENABLE_MPI
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MPI_LIB_DEPENDS= libmpi.so:net/openmpi
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.include <bsd.port.mk>
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@ -1,3 +1,3 @@
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TIMESTAMP = 1541374760
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SHA256 (moab-4.6.3.tar.gz) = a25933254a05013811d3769e5d96b01cc7b5d67026acacbaae4f3568ce18fd7f
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SIZE (moab-4.6.3.tar.gz) = 21861257
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TIMESTAMP = 1543026884
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SHA256 (moab-5.0.0.tar.gz) = 80fd376e71bc40b1cdf1c5ebd9c14e8cfe185e7554ff352431cbcb82a44920e3
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SIZE (moab-5.0.0.tar.gz) = 12370425
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@ -1,12 +0,0 @@
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--- configure.ac.orig 2018-11-05 00:30:52 UTC
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+++ configure.ac
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@@ -31,7 +31,8 @@ LIBS="$LIBS -lm"
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AC_PROG_LN_S
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AC_PROG_MAKE_SET
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-AC_DISABLE_SHARED
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+AC_ENABLE_SHARED
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+AC_DISABLE_STATIC
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AC_PROG_LIBTOOL
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FATHOM_COMPILER_FLAGS
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m4_ifdef([AM_SILENT_RULES],[
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@ -1,11 +0,0 @@
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--- src/io/NCHelper.cpp.orig 2018-11-05 01:48:41 UTC
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+++ src/io/NCHelper.cpp
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@@ -714,7 +714,7 @@ ErrorCode NCHelper::get_tag_to_set(ReadN
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rval = mbImpl->tag_get_handle(tag_name.str().c_str(), 0, MB_TYPE_INTEGER, tagh, MB_TAG_CREAT | MB_TAG_SPARSE | MB_TAG_VARLEN);
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break;
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default:
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- std::cerr << "Unrecognized data type for tag " << tag_name << std::endl;
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+ std::cerr << "Unrecognized data type for tag " << tag_name.str() << std::endl;
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rval = MB_FAILURE;
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}
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@ -1,11 +0,0 @@
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--- src/io/ReadABAQUS.cpp.orig 2018-11-04 23:41:08 UTC
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+++ src/io/ReadABAQUS.cpp
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@@ -105,7 +105,7 @@ void ReadABAQUS::reset()
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ReadABAQUS::~ReadABAQUS()
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{
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mdbImpl->release_interface(readMeshIface);
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- if (NULL != abFile)
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+ if (abFile.is_open())
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abFile.close();
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}
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@ -1,13 +1,13 @@
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--- src/io/WriteNCDF.cpp.orig 2018-11-05 01:47:40 UTC
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--- src/io/WriteNCDF.cpp.orig 2018-11-23 06:26:09 UTC
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+++ src/io/WriteNCDF.cpp
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@@ -154,8 +154,8 @@ void WriteNCDF::time_and_date(char* time
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@@ -161,8 +161,8 @@ void WriteNCDF::time_and_date(char* time
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strftime(date_string, TIME_STR_LEN, "%m/%d/%Y", local_time);
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// terminate with NULL character
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// Terminate with NULL character
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- time_string[10] = (char)NULL;
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- date_string[10] = (char)NULL;
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+ time_string[10] = (char)0;
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+ date_string[10] = (char)0;
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}
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ErrorCode WriteNCDF::write_file(const char *exodus_file_name,
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ErrorCode WriteNCDF::write_file(const char *exodus_file_name,
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@ -12,4 +12,4 @@ provenance information for the mesh. Because the data model used in MOAB is so
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abstract, conventions are useful for describing how meta-data is stored into
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that data model.
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WWW: http://sigma.mcs.anl.gov/moab-library/
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WWW: https://press3.mcs.anl.gov/sigma/moab-library/
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@ -1,54 +1,31 @@
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bin/dagmc_preproc
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bin/h5minfo
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bin/h5mvalidate
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bin/hexmodops
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bin/mbconvert
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bin/mbdepth
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bin/mbgsets
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bin/mbhonodes
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bin/mbmem
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bin/mbquality
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bin/mbsize
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bin/mbskin
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bin/mbslavepart
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bin/mbsurfplot
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bin/mbtagprop
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bin/spheredecomp
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include/DagMC.hpp
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include/MBAdaptiveKDTree.hpp
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include/MBBSPTree.hpp
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include/MBBSPTreePoly.hpp
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bin/mbumr
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%%MPI%%include/Coupler.hpp
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%%MPI%%include/ElemUtil.hpp
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include/MBCN.h
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include/MBCN.hpp
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include/MBCN_protos.h
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include/MBCartVect.hpp
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include/MBCore.hpp
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include/MBEntityHandle.h
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include/MBEntityType.h
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include/MBForward.hpp
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include/MBGeomUtil.hpp
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include/MBInterface.hpp
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include/MBOrientedBoxTreeTool.hpp
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include/MBParallelComm.hpp
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include/MBParallelData.hpp
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include/MBProcConfig.hpp
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include/MBRange.hpp
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include/MBReadUtilIface.hpp
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include/MBReaderIface.hpp
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include/MBReaderWriterSet.hpp
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include/MBSkinner.hpp
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%%MPI%%include/MBParallelConventions.h
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include/MBTagConventions.hpp
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include/MBTypes.h
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include/MBUnknownInterface.hpp
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include/MBUtil.hpp
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include/MBVersion.h
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include/MBWriteUtilIface.hpp
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include/MBWriterIface.hpp
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include/MBiMesh.hpp
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include/MBmpi.h
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include/MOAB_FCDefs.h
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include/iBase.h
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include/iBase_f.h
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include/iMesh.h
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%%MPI%%include/iMeshP.h
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%%MPI%%include/iMeshP_f.h
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%%MPI%%include/iMeshP_protos.h
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include/iMesh_extensions.h
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include/iMesh_extensions_protos.h
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include/iMesh_f.h
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include/iMesh_protos.h
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include/moab/AdaptiveKDTree.hpp
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@ -66,27 +43,44 @@ include/moab/ElemEvaluator.hpp
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include/moab/EntityHandle.hpp
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include/moab/EntityType.hpp
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include/moab/Error.hpp
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include/moab/ErrorHandler.hpp
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include/moab/ExoIIInterface.hpp
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include/moab/FBEngine.hpp
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include/moab/FileOptions.hpp
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include/moab/FindPtFuncs.h
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include/moab/Forward.hpp
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include/moab/GeomQueryTool.hpp
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include/moab/GeomTopoTool.hpp
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include/moab/GeomUtil.hpp
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include/moab/HalfFacetRep.hpp
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include/moab/HigherOrderFactory.hpp
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include/moab/HomXform.hpp
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include/moab/Interface.hpp
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include/moab/LinearHex.hpp
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include/moab/LinearQuad.hpp
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include/moab/LinearTet.hpp
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include/moab/LinearTri.hpp
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include/moab/IntxMesh/Intx2Mesh.hpp
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include/moab/IntxMesh/Intx2MeshInPlane.hpp
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include/moab/IntxMesh/Intx2MeshOnSphere.hpp
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include/moab/IntxMesh/IntxRllCssphere.hpp
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include/moab/IntxMesh/IntxUtils.hpp
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include/moab/LloydSmoother.hpp
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include/moab/LocalDiscretization/LinearHex.hpp
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include/moab/LocalDiscretization/LinearQuad.hpp
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include/moab/LocalDiscretization/LinearTet.hpp
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include/moab/LocalDiscretization/LinearTri.hpp
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include/moab/LocalDiscretization/QuadraticHex.hpp
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include/moab/MOABConfig.h
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include/moab/Matrix3.hpp
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include/moab/MergeMesh.hpp
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include/moab/MeshGeneration.hpp
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include/moab/MeshTopoUtil.hpp
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include/moab/NestedRefine.hpp
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include/moab/NestedRefineTemplates.hpp
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include/moab/OrientedBox.hpp
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include/moab/OrientedBoxTreeTool.hpp
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%%MPI%%include/moab/ParallelComm.hpp
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%%MPI%%include/moab/ParallelData.hpp
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%%MPI%%include/moab/ParallelMergeMesh.hpp
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%%MPI%%include/moab/ProcConfig.hpp
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include/moab/ProgOptions.hpp
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include/moab/QuadraticHex.hpp
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include/moab/Range.hpp
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include/moab/RangeMap.hpp
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include/moab/ReadUtilIface.hpp
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@ -105,9 +99,12 @@ include/moab/TupleList.hpp
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include/moab/Types.hpp
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include/moab/UnknownInterface.hpp
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include/moab/Util.hpp
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include/moab/Version.h
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include/moab/VtkUtil.hpp
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include/moab/WriteUtilIface.hpp
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include/moab/WriterIface.hpp
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%%MPI%%include/moab/gs.hpp
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include/moab/iMOAB.h
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include/moab/mhdf_public.h
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include/moab/point_locater/element_maps/linear_hex_map.hpp
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include/moab/point_locater/element_maps/linear_tet_map.hpp
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include/moab/point_locater/element_maps/quadratic_hex_map.hpp
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@ -118,17 +115,19 @@ include/moab/point_locater/point_locater.hpp
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include/moab/point_locater/tree/bvh_tree.hpp
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include/moab/point_locater/tree/common_tree.hpp
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include/moab/point_locater/tree/element_tree.hpp
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lib/MOABConfig.cmake
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include/moab/verdict.h
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include/moab/verdict/VerdictWrapper.hpp
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%%MPI%%include/moab_mpi.h
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%%MPI%%include/moab_mpi_config.h
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lib/cmake/MOAB/MOABConfig.cmake
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lib/cmake/MOAB/MOABTargets-%%CMAKE_BUILD_TYPE%%.cmake
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lib/cmake/MOAB/MOABTargets.cmake
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lib/iMesh-Defs.inc
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lib/libMOAB.so
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lib/libMOAB.so.0
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lib/libMOAB.so.0.0.0
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lib/libdagmc.so
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lib/libdagmc.so.0
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lib/libdagmc.so.0.0.0
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lib/libMOAB.so.5
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lib/libMOAB.so.5.0.0
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lib/libiMesh.so
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lib/libiMesh.so.0
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lib/libiMesh.so.0.0.0
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lib/moab.config
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lib/libiMesh.so.5
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lib/libiMesh.so.5.0.0
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%%MPI%%lib/libmbcoupler.so
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lib/moab.make
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man/man1/mbconvert.1.gz
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