devel/iscd-commons: new port, common codes used for ISCD softwares

Used by Elas.

devel/Makefile

@@ -1020,6 +1020,7 @@
     SUBDIR += ipython
     SUBDIR += ireport
     SUBDIR += isa-l
+    SUBDIR += iscd-commons
     SUBDIR += isfreedesktop
     SUBDIR += isl
     SUBDIR += ispc

devel/iscd-commons/Makefile

@@ -0,0 +1,22 @@
+PORTNAME=	Commons
+PORTVERSION=	1.0.0
+DISTVERSIONPREFIX=	v
+CATEGORIES=	devel science
+PKGNAMEPREFIX=	ISCD-
+
+MAINTAINER=	thierry@FreeBSD.org
+COMMENT=	Common code shared by many ISCD softwares
+WWW=		https://github.com/ISCDtoolbox/Commons
+
+LICENSE=	GPLv3
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+USES=		cmake:testing
+
+USE_GITHUB=	yes
+GH_ACCOUNT=	ISCDtoolbox
+
+CFLAGS+=	-funroll-loops
+USE_LDCONFIG=	yes
+
+.include <bsd.port.mk>

devel/iscd-commons/distinfo

@@ -0,0 +1,3 @@
+TIMESTAMP = 1719075163
+SHA256 (ISCDtoolbox-Commons-v1.0.0_GH0.tar.gz) = d230f8a786bf8f6a14db21243c71ccb9c5d408da5da89ae6f334d1339c10f83e
+SIZE (ISCDtoolbox-Commons-v1.0.0_GH0.tar.gz) = 48376

devel/iscd-commons/files/patch-CMakeLists.txt

@@ -0,0 +1,34 @@
+--- CMakeLists.txt.orig	2021-07-23 10:27:28 UTC
++++ CMakeLists.txt
+@@ -1,6 +1,4 @@ cmake_minimum_required(VERSION 2.8)
+ cmake_minimum_required(VERSION 2.8)
+-set(CMAKE_BUILD_TYPE  "Release")
+-SET(CMAKE_C_FLAGS   "-w -g -O3 -funroll-loops")
+ set(CMAKE_MACOSX_RPATH 1)
+ set(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
+ 
+@@ -17,7 +15,7 @@ FIND_LIBRARY(          M_LIB m)
+   endif()
+ endif()
+ FIND_LIBRARY(          M_LIB m)
+-SET(                   LIBRARIES ${M_LIB} "-lpthread")
++SET(                   LIBRARIES ${M_LIB} "-pthread")
+ 
+ #Commons library
+ SET(                   SOURCES_DIR sources)
+@@ -25,11 +23,12 @@ add_library(           Commons SHARED ${source_files})
+ file(                  GLOB_RECURSE header_files ${SOURCES_DIR}/*.h)
+ include_directories(   ${SOURCES_DIR})
+ add_library(           Commons SHARED ${source_files})
++set_target_properties( Commons PROPERTIES VERSION 0.0.0 SOVERSION 0)
+ TARGET_LINK_LIBRARIES( Commons ${LIBRARIES})
+ 
+ INSTALL(
+   TARGETS Commons
+-  RUNTIME DESTINATION "$ENV{HOME}/lib"
+-  LIBRARY DESTINATION "$ENV{HOME}/lib")
++  RUNTIME DESTINATION ${Commons_BINARY_DIR}
++  LIBRARY DESTINATION lib${LIB_SUFFIX})
+ 
+-INSTALL(               FILES   ${header_files} DESTINATION "$ENV{HOME}/include")
++INSTALL(               FILES   ${header_files} DESTINATION include/ISCD)

devel/iscd-commons/files/patch-sources_lplib3.c

@@ -0,0 +1,20 @@
+--- sources/lplib3.c.orig	2021-07-23 10:27:28 UTC
++++ sources/lplib3.c
+@@ -30,6 +30,9 @@
+ #include <assert.h>
+ #include <errno.h>
+ #include <unistd.h>
++#ifdef __FreeBSD__
++#include <pmc.h>
++#endif
+ #include "lplib3.h"
+ 
+ 
+@@ -1251,6 +1254,7 @@ void qsort_mt(void *a, size_t n, size_t es, cmp_t *cmp
+ 		 * NPROC environment variable (BSD/OS, CrayOS)
+ 		 * sysctl hw.ncpu or kern.smp.cpus
+ 		 */
++		uint32_t ncpu;
+ 		if (pmc_init() == 0 && (ncpu = pmc_ncpu()) != -1)
+ 			maxthreads = ncpu;
+ 		else

devel/iscd-commons/pkg-descr

@@ -0,0 +1,4 @@
+This port contains common codes used for ISCD softwares (Linear algebra, Chrono,
+I/O...).
+
+See also <https://iscd.sorbonne-universite.fr/resources/>.

devel/iscd-commons/pkg-plist

@@ -0,0 +1,8 @@
+include/ISCD/chrono.h
+include/ISCD/eigen.h
+include/ISCD/libmesh5.h
+include/ISCD/lplib3.h
+include/ISCD/sparse.h
+lib/libCommons.so
+lib/libCommons.so.0
+lib/libCommons.so.0.0.0