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biology/fastp: Update to 0.24.1

Browse source 
Bug fix release
Changes: https://github.com/OpenGene/fastp/releases

Reported by:    portscout
This commit is contained in:
Jason W. Bacon 2025-04-17 07:51:42 -05:00
parent 5f188d6d70
commit b3f6f8596d
3 changed files with 16 additions and 23 deletions
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2
biology/fastp/Makefile
View file

@ -1,6 +1,6 @@
PORTNAME= fastp
DISTVERSIONPREFIX= v
DISTVERSION= 0.24.0
DISTVERSION= 0.24.1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org

6
biology/fastp/distinfo
View file

@ -1,3 +1,3 @@
TIMESTAMP = 1731759959
SHA256 (OpenGene-fastp-v0.24.0_GH0.tar.gz) = 42445973c57be9209c753027e99781261c69381013813c576ad447e413ff3d04
SIZE (OpenGene-fastp-v0.24.0_GH0.tar.gz) = 164236
TIMESTAMP = 1744893121
SHA256 (OpenGene-fastp-v0.24.1_GH0.tar.gz) = dd8a1b7e0410a800f80939e4d14b116e90bbec83ef7294a5f13fdaaba3fcc719
SIZE (OpenGene-fastp-v0.24.1_GH0.tar.gz) = 164307

31
biology/fastp/files/patch-Makefile
View file

@ -1,28 +1,19 @@
--- Makefile.orig 2021-10-19 02:19:29 UTC
--- Makefile.orig 2025-04-16 10:13:35 UTC
+++ Makefile
@@ -2,11 +2,13 @@ DIR_INC := ./inc
DIR_SRC := ./src
DIR_OBJ := ./obj
-PREFIX ?= /usr/local
-BINDIR ?= $(PREFIX)/bin
-INCLUDE_DIRS ?=
-LIBRARY_DIRS ?=
+PREFIX ?= /usr/local
+BINDIR ?= $(PREFIX)/bin
+INCLUDE_DIRS ?=
+LIBRARY_DIRS ?=
@@ -7,6 +7,8 @@ LIBRARY_DIRS ?=
INCLUDE_DIRS ?=
LIBRARY_DIRS ?=
+STRIP ?= strip
+
SRC := $(wildcard ${DIR_SRC}/*.cpp)
OBJ := $(patsubst %.cpp,${DIR_OBJ}/%.o,$(notdir ${SRC}))
@@ -15,15 +17,19 @@ TARGET := fastp
@@ -15,15 +17,20 @@ CXX ?= g++
BIN_TARGET := ${TARGET}
CXX ?= g++
-CXXFLAGS := -std=c++11 -pthread -g -O3 -I${DIR_INC} $(foreach includedir,$(INCLUDE_DIRS),-I$(includedir)) ${CXXFLAGS}
-CXXFLAGS := -std=c++11 -pthread -g -O3 -MD -MP -I${DIR_INC} $(foreach includedir,$(INCLUDE_DIRS),-I$(includedir)) ${CXXFLAGS}
+# Optional flags that the user can override by setting CXXFLAGS in the
+# env or make argument
+CXXFLAGS ?= -g -O3
@ -35,16 +26,16 @@
+LDFLAGS += $(foreach librarydir,$(LIBRARY_DIRS),-L$(librarydir)) $(LIBS)
STATIC_LD_FLAGS := $(foreach librarydir,$(LIBRARY_DIRS),-L$(librarydir)) $(STATIC_FLAGS) $(LIBS) $(STATIC_LD_FLAGS)
-
${BIN_TARGET}:${OBJ}
- $(CXX) $(OBJ) -o $@ $(LD_FLAGS)
+ $(CXX) $(OBJ) -o $@ $(LDFLAGS)
static:${OBJ}
$(CXX) $(OBJ) -o ${BIN_TARGET} $(STATIC_LD_FLAGS)
@@ -49,6 +55,11 @@ make_obj_dir:
mkdir $(DIR_OBJ) ; \
fi
@@ -38,8 +45,13 @@ clean:
@rm -rf $(DIR_OBJ)
@rm -f $(TARGET)
+# Respect DESTDIR for staged installs (used by most package managers)
install:
@ -55,3 +46,5 @@
+# Many package managers use install-strip target if debugging is not enabled
+install-strip: install
+ $(STRIP) $(DESTDIR)$(BINDIR)/$(TARGET)
-include $(OBJ:.o=.d)