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biology/{,py-}libnuml: update 1.1.6 → 1.1.7

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Reported by:	portscout
This commit is contained in:
Yuri Victorovich 2025-03-28 02:53:25 -07:00
parent 27f168ff67
commit a63cf26b66
7 changed files with 35 additions and 22 deletions
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2
biology/libnuml/Makefile
View file

@ -1,6 +1,6 @@
PORTNAME= libnuml
DISTVERSIONPREFIX= v
DISTVERSION= 1.1.6
DISTVERSION= 1.1.7
CATEGORIES= biology devel
MAINTAINER= yuri@FreeBSD.org

6
biology/libnuml/distinfo
View file

@ -1,3 +1,3 @@
TIMESTAMP = 1650763295
SHA256 (NuML-NuML-v1.1.6_GH0.tar.gz) = 1b51cd51bfe7e9c4e0bcd69f86d8199a23ebe9ea931d4f112b3f6e1666e4f2c8
SIZE (NuML-NuML-v1.1.6_GH0.tar.gz) = 3425639
TIMESTAMP = 1743154013
SHA256 (NuML-NuML-v1.1.7_GH0.tar.gz) = 820d854355d80a3fe6dbe6c5428c45d42542541213cf0c3b3aee705f8ba1399f
SIZE (NuML-NuML-v1.1.7_GH0.tar.gz) = 3427204

20
biology/libnuml/files/patch-CMakeLists.txt Normal file
View file

@ -0,0 +1,20 @@
- https://github.com/NuML/NuML/issues/31
--- CMakeLists.txt.orig 2025-03-28 09:30:46 UTC
+++ CMakeLists.txt
@@ -48,7 +48,7 @@ project(libnuml VERSION "${LIBNUML_VERSION_MAJOR}.${LI
endif()
project(libnuml VERSION "${LIBNUML_VERSION_MAJOR}.${LIBNUML_VERSION_MINOR}.${LIBNUML_VERSION_PATCH}"
- LANGUAGES CXX)
+ LANGUAGES CXX C)
include (CMakeTestCXXCompiler)
include (CheckCSourceCompiles)
@@ -757,4 +757,4 @@ message(STATUS "
endif()
message(STATUS "
-----------------------------------------------------------------------")
\ No newline at end of file
+----------------------------------------------------------------------")

8
biology/libnuml/pkg-plist
View file

@ -32,13 +32,15 @@ include/numl/common/libnuml-package.h
include/numl/common/libnuml-version.h
include/numl/common/numlfwd.h
include/numl/common/operationReturnValues.h
lib/cmake/numl-config-%%CMAKE_BUILD_TYPE%%.cmake
lib/cmake/numl-config-version.cmake
lib/cmake/numl-config.cmake
lib/cmake/numl-static-config-%%CMAKE_BUILD_TYPE%%.cmake
lib/cmake/numl-static-config-version.cmake
lib/cmake/numl-static-config.cmake
lib/cmake/numl-static-targets-%%CMAKE_BUILD_TYPE%%.cmake
lib/cmake/numl-static-targets.cmake
lib/cmake/numl-targets-%%CMAKE_BUILD_TYPE%%.cmake
lib/cmake/numl-targets.cmake
lib/libnuml-static.a
lib/libnuml.so
lib/libnuml.so.1
lib/libnuml.so.1.1.6
lib/libnuml.so.1.1.7

2
biology/py-libnuml/Makefile
View file

@ -1,6 +1,6 @@
PORTNAME= libnuml
DISTVERSIONPREFIX= v
DISTVERSION= 1.1.6
DISTVERSION= 1.1.7
CATEGORIES= biology devel
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}

6
biology/py-libnuml/distinfo
View file

@ -1,3 +1,3 @@
TIMESTAMP = 1650763370
SHA256 (NuML-NuML-v1.1.6_GH0.tar.gz) = 1b51cd51bfe7e9c4e0bcd69f86d8199a23ebe9ea931d4f112b3f6e1666e4f2c8
SIZE (NuML-NuML-v1.1.6_GH0.tar.gz) = 3425639
TIMESTAMP = 1743153975
SHA256 (NuML-NuML-v1.1.7_GH0.tar.gz) = 820d854355d80a3fe6dbe6c5428c45d42542541213cf0c3b3aee705f8ba1399f
SIZE (NuML-NuML-v1.1.7_GH0.tar.gz) = 3427204

13
biology/py-libnuml/files/patch-CMakeLists.txt
View file

@ -1,19 +1,10 @@
--- CMakeLists.txt.orig 2022-04-19 08:09:02 UTC
--- CMakeLists.txt.orig 2025-03-28 09:49:26 UTC
+++ CMakeLists.txt
@@ -53,7 +53,7 @@ if (LIBNUML_REMOVE_WRAPPERS)
endif(LIBNUML_REMOVE_WRAPPERS)
-set(SWIG_EXTRA_FLAGS -DSWIGEXPORT -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSBML_CPP_NAMESPACE_QUALIFIER -DLIBSBML_CPP_NAMESPACE_USE)
+set(SWIG_EXTRA_FLAGS -DSWIGEXPORT -DLIBSBML_CPP_NAMESPACE_BEGIN= -DLIBSBML_CPP_NAMESPACE_END= -DLIBSBML_CPP_NAMESPACE_QUALIFIER= -DLIBSBML_CPP_NAMESPACE_USE=)
if(NOT UNIX)
set(SWIG_EXTRA_FLAGS ${SWIG_EXTRA_FLAGS} -DSWIGWIN -DSWIG_CSHARP_NO_WSTRING_HELPER )
endif()
@@ -62,6 +62,7 @@ ADD_CUSTOM_COMMAND(
OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/libnuml_wrap.cpp
COMMAND "${SWIG_EXECUTABLE}"
ARGS -I${CMAKE_CURRENT_SOURCE_DIR}/../swig/
+ -I${CMAKE_INSTALL_PREFIX}/include
+ -I${CMAKE_INSTALL_PREFIX}/include
-I${CMAKE_SOURCE_DIR}/
-I${CMAKE_BINARY_DIR}/
-I${CMAKE_BINARY_DIR}/src