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biology/infernal: update 1.1.4 → 1.1.5

Browse source 
ChangeLog:
https://github.com/EddyRivasLab/infernal/blob/master/release-notes/RELEASE-1.1.5.md

PR:		283483
Reported by:	alster@vinterdalen.se
Approved by:	mzaki@e-mail.ne.jp (maintainer, timeout > 2 weeks)
This commit is contained in:
Älven 2025-01-29 11:56:37 +01:00 • committed by Fernando Apesteguía
parent e710c7918f
commit 8e8bb42678
3 changed files with 17 additions and 14 deletions
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22
biology/infernal/Makefile
View file

@ -1,12 +1,12 @@
PORTNAME= infernal PORTNAME= infernal
PORTVERSION= 1.1.4 DISTVERSION= 1.1.5
PORTREVISION= 1
CATEGORIES= biology CATEGORIES= biology
MASTER_SITES= http://eddylab.org/infernal/ MASTER_SITES= http://eddylab.org/infernal/
MAINTAINER= mzaki@e-mail.ne.jp MAINTAINER= mzaki@e-mail.ne.jp
COMMENT= Search sequence databases for structural RNA homologs COMMENT= Search sequence databases for structural RNA homologs
WWW= http://eddylab.org/infernal/ WWW= http://eddylab.org/infernal/ \
https://github.com/EddyRivasLab/infernal/
LICENSE= BSD3CLAUSE LICENSE= BSD3CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE LICENSE_FILE= ${WRKSRC}/LICENSE
@ -16,28 +16,28 @@ ONLY_FOR_ARCHS_REASON= requires SSE2 or AltiVec instructions
USES= compiler:c11 gmake perl5 python:test shebangfix USES= compiler:c11 gmake perl5 python:test shebangfix
USE_PERL5= test USE_PERL5= test
SHEBANG_FILES= easel/devkit/* SHEBANG_FILES= easel/devkit/*
SHEBANG_GLOB= *.pl *.py SHEBANG_GLOB= *.pl *.py
GNU_CONFIGURE= yes GNU_CONFIGURE= yes
GNU_CONFIGURE_MANPREFIX=${PREFIX}/share
MAKE_ARGS= V=1
MAKE_ARGS= V=1
TEST_TARGET= check TEST_TARGET= check
OPTIONS_DEFINE= DOCS EXAMPLES TEST OPTIONS_DEFINE= DOCS EXAMPLES TEST
TEST_BUILD_DEPENDS= ${PYTHON_VERSION}:lang/python${PYTHON_SUFFIX}
TEST_VARS= use_perl5=build
DOCFILES= Userguide.pdf DOCFILES= Userguide.pdf
EXAMPLES= 5S_rRNA.c.cm 5S_rRNA.sto \ EXAMPLES= 5S_rRNA.c.cm 5S_rRNA.sto \
Cobalamin.c.cm Cobalamin.fa Cobalamin.sto \ Cobalamin.c.cm Cobalamin.fa Cobalamin.sto Rfam.14.9.clanin \
metag-example.fa minifam-metag.out minifam.cm \ metag-example.fa minifam-metag.out minifam.cm \
minifam.cm.i1f minifam.cm.i1i minifam.cm.i1m minifam.cm.i1p \ minifam.cm.i1f minifam.cm.i1i minifam.cm.i1m minifam.cm.i1p \
mrum-genome.fa mrum-tRNAs10.fa mrum-tRNAs10.out \ mrum-genome.fa mrum-tRNAs10.fa mrum-tRNAs10.out \
tRNA5-hand.c.cm tRNA5-hand.sto tRNA5-mrum.out \ tRNA5-hand.c.cm tRNA5-hand.frag.sto tRNA5-hand.fraggiven.sto \
tRNA5-noss.sto tRNA5.c.cm tRNA5.sto tRNA5-hand.sto tRNA5-mrum.out tRNA5-noss.sto tRNA5.c.cm tRNA5.sto
TEST_BUILD_DEPENDS= ${PYTHON_VERSION}:lang/python${PYTHON_SUFFIX}
TEST_VARS= use_perl5=build
post-build-TEST-on: pre-test do-test post-build-TEST-on: pre-test do-test

6
biology/infernal/distinfo
View file

@ -1,3 +1,3 @@
TIMESTAMP = 1665487539 TIMESTAMP = 1734834453
SHA256 (infernal-1.1.4.tar.gz) = f9493c7dee9fbf25f6405706818883d24b9f5e455121a0662c96c8f0307f95fc SHA256 (infernal-1.1.5.tar.gz) = ad4ddae02f924ca7c85bc8c4a79c9f875af8df96aeb726702fa985cbe752497f
SIZE (infernal-1.1.4.tar.gz) = 29499238 SIZE (infernal-1.1.5.tar.gz) = 31300142

3
biology/infernal/pkg-plist
View file

@ -25,6 +25,7 @@ share/man/man1/infernal.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/Cobalamin.c.cm %%PORTEXAMPLES%%%%EXAMPLESDIR%%/Cobalamin.c.cm
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/Cobalamin.fa %%PORTEXAMPLES%%%%EXAMPLESDIR%%/Cobalamin.fa
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/Cobalamin.sto %%PORTEXAMPLES%%%%EXAMPLESDIR%%/Cobalamin.sto
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/Rfam.14.9.clanin
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/metag-example.fa %%PORTEXAMPLES%%%%EXAMPLESDIR%%/metag-example.fa
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/minifam-metag.out %%PORTEXAMPLES%%%%EXAMPLESDIR%%/minifam-metag.out
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/minifam.cm %%PORTEXAMPLES%%%%EXAMPLESDIR%%/minifam.cm
@ -36,6 +37,8 @@ share/man/man1/infernal.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/mrum-tRNAs10.fa %%PORTEXAMPLES%%%%EXAMPLESDIR%%/mrum-tRNAs10.fa
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/mrum-tRNAs10.out %%PORTEXAMPLES%%%%EXAMPLESDIR%%/mrum-tRNAs10.out
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tRNA5-hand.c.cm %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tRNA5-hand.c.cm
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tRNA5-hand.frag.sto
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tRNA5-hand.fraggiven.sto
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tRNA5-hand.sto %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tRNA5-hand.sto
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tRNA5-mrum.out %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tRNA5-mrum.out
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tRNA5-noss.sto %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tRNA5-noss.sto