biology/py-crossmap: Update to 0.7.3

Several fixes and enhancements since 0.5.4
Changes: https://github.com/liguowang/CrossMap/releases

PR:             284923
Reported by:    alster@vinterdalen.se

biology/py-crossmap/Makefile

@@ -1,16 +1,14 @@
 PORTNAME=	crossmap
-DISTVERSION=	0.5.4
-PORTREVISION=	1
+DISTVERSION=	0.7.3
 CATEGORIES=	biology python
 MASTER_SITES=	PYPI
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
-DISTNAME=	CrossMap-${DISTVERSION}
 
 MAINTAINER=	jwb@FreeBSD.org
 COMMENT=	Lift over genomics coordinates between assemblies
-WWW=		https://pypi.python.org/pypi/crossmap
+WWW=		https://github.com/liguowang/CrossMap
 
-LICENSE=	GPLv2
+LICENSE=	GPLv3+
 LICENSE_FILE=	${WRKSRC}/LICENSE.txt
 
 BUILD_DEPENDS=	${PYTHON_PKGNAMEPREFIX}nose>0.10.4:devel/py-nose@${PY_FLAVOR}

biology/py-crossmap/distinfo

@@ -1,3 +1,3 @@
-TIMESTAMP = 1618936542
-SHA256 (CrossMap-0.5.4.tar.gz) = 3419a5bf422754c3acb1e59ec9bba1a6c9a19d3673e962ae832e429ef0f768e5
-SIZE (CrossMap-0.5.4.tar.gz) = 9511082
+TIMESTAMP = 1740057259
+SHA256 (crossmap-0.7.3.tar.gz) = c5793d1bbfea962b3f21d8cd9830a79a169b3a3ec6461555d819be125b391f6d
+SIZE (crossmap-0.7.3.tar.gz) = 33325

biology/py-crossmap/files/patch-lib_cmmodule_twoList.py

@@ -1,18 +0,0 @@
---- lib/cmmodule/twoList.py.orig	2021-04-04 22:42:53 UTC
-+++ lib/cmmodule/twoList.py
-@@ -5,7 +5,7 @@ from operator import mul,add,sub
- def check_list(v1,v2):
- 	'''check if the length of two list is same'''
- 	if v1.size != v2.size:
--		raise ValueError,"the lenght of both arrays must be the same"
-+		raise ValueError("the length of both arrays must be the same")
- 	pass
- 
- def Add(v1,v2):
-@@ -50,4 +50,4 @@ def Min(v1,v2):
- def euclidean_distance(v1,v2):
- 	'''return euclidean distance'''                                                                                 
- 	check_list(v1,v2)
--	return (sum((v1.__sub__(v2))**2) / v1.size)**0.5
-\ No newline at end of file
-+	return (sum((v1.__sub__(v2))**2) / v1.size)**0.5

biology/py-crossmap/files/patch-setup.py

@@ -1,10 +0,0 @@
---- setup.py.orig	2021-04-05 15:27:07 UTC
-+++ setup.py
-@@ -11,7 +11,6 @@ def main():
-     setup(  name = "CrossMap",
-             version = "0.5.2",
-             python_requires='>=3.5',
--            py_modules = [ 'psyco_full' ],
-             packages = find_packages( 'lib' ),
-             package_dir = { '': 'lib' },
-             package_data = { '': ['*.ps'] },