databases/py-tiledb: Update to 0.31.1

Changes:	https://github.com/TileDB-Inc/TileDB-Py/releases

databases/py-tiledb/Makefile

@@ -1,5 +1,5 @@
 PORTNAME=	tiledb
-PORTVERSION=	0.30.2
+PORTVERSION=	0.31.1
 CATEGORIES=	databases python
 MASTER_SITES=	PYPI
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
@@ -14,15 +14,14 @@ LICENSE_FILE=	${WRKSRC}/LICENSE
 
 BUILD_DEPENDS=	${PYTHON_PKGNAMEPREFIX}numpy>=1.25,1:math/py-numpy@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pybind11>=0:devel/py-pybind11@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}setuptools>=61:devel/py-setuptools@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}scikit-build-core>=0:devel/py-scikit-build-core@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}setuptools-scm>=1.5.4:devel/py-setuptools-scm@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}wheel>=0.30:devel/py-wheel@${PY_FLAVOR} \
-		tiledb>=2.24.2:databases/tiledb
+		tiledb>=2.25.0:databases/tiledb
 LIB_DEPENDS=	libtiledb.so:databases/tiledb
 RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}numpy>=1.25,1:math/py-numpy@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}packaging>=0:devel/py-packaging@${PY_FLAVOR}
 
-USES=		compiler:c++17-lang localbase python
+USES=		cmake:indirect compiler:c++17-lang localbase python
 USE_PYTHON=	autoplist concurrent cython pep517
 
 MAKE_ENV=	TILEDB_PATH=${LOCALBASE}

databases/py-tiledb/distinfo

@@ -1,3 +1,3 @@
-TIMESTAMP = 1720447662
-SHA256 (tiledb-0.30.2.tar.gz) = 8a70e62b1cea6a1bba8afb1d36a635e9c5435db733944fb4e6d7493fa1d914a3
-SIZE (tiledb-0.30.2.tar.gz) = 345280
+TIMESTAMP = 1722711191
+SHA256 (tiledb-0.31.1.tar.gz) = 7b9ddd32c4c7437111764645d8a042d603102a813c8b89addaf9a15bd40dd939
+SIZE (tiledb-0.31.1.tar.gz) = 365917

databases/py-tiledb/files/patch-pyproject.toml

@@ -1,18 +1,11 @@
---- pyproject.toml.orig	2024-06-11 17:54:39 UTC
+--- pyproject.toml.orig	2022-11-09 12:37:21 UTC
 +++ pyproject.toml
-@@ -1,13 +1,13 @@ requires = [
- [build-system]
- requires = [
--    "setuptools>=64",
-+    "setuptools>=61",
-     "wheel",
-     "pybind11",
-     "Cython",
+@@ -6,7 +6,7 @@ requires = [
      "numpy==1.17.* ; python_version == '3.8' and platform_machine not in 'arm64|aarch64'",
      "numpy==1.19.* ; python_version == '3.8' and platform_machine == 'aarch64'",
      "numpy==1.21.* ; python_version == '3.8' and platform_machine == 'arm64'",
--    "numpy>=2.0.0rc2 ; python_version >= '3.9'",
-+    "numpy>=1.25 ; python_version >= '3.9'",
+-    "numpy>=2.0.0rc2 ; python_version >= '3.9'"
++    "numpy>=1.25; python_version >= '3.9'"
  ]
- build-backend = "setuptools.build_meta"
+ build-backend = "scikit_build_core.build"
  

databases/py-tiledb/files/patch-requirements_dev.txt

@@ -1,18 +0,0 @@
---- requirements_dev.txt.orig	2024-06-11 17:54:39 UTC
-+++ requirements_dev.txt
-@@ -6,14 +6,10 @@ numpy>=1.25 ; python_version >= '3.9'
- # ------------------------------------------------
- # ** MUST sync with misc/requirements_wheel.txt **
- # ------------------------------------------------
--build
--cmake >= 3.23
- cython
- pybind11
--setuptools >= 64
-+setuptools >= 61
- setuptools_scm >= 8
- wheel >= 0.30
- contextvars ;python_version<"3.7"
- dataclasses ;python_version<"3.7"
--pytest
---r misc/requirements_test.txt

databases/py-tiledb/files/patch-setup.py

@@ -1,15 +0,0 @@
---- setup.py.orig	2023-01-04 19:23:00 UTC
-+++ setup.py
-@@ -555,12 +555,6 @@ def setup_requires():
-         req = parse_requirements("requirements_dev.txt")
-         req = list(filter(lambda r: not r.startswith("-r"), req))
- 
--    req_cmake = list(filter(lambda r: "cmake" in r, req))[0]
--
--    # Add cmake requirement if libtiledb is not found and cmake is not available.
--    if not libtiledb_exists(LIB_DIRS) and not cmake_available():
--        req.append(req_cmake)
--
-     return req
- 
-