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biology/py-pyrodigal: update 3.5.2 → 3.6.3

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This commit is contained in:
Yuri Victorovich 2024-11-12 00:25:53 -08:00
parent 0f5d41146f
commit 7adb8c360b
2 changed files with 12 additions and 10 deletions
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16
biology/py-pyrodigal/Makefile
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@ -1,31 +1,33 @@
PORTNAME= pyrodigal PORTNAME= pyrodigal
DISTVERSION= 3.5.2 DISTVERSION= 3.6.3
CATEGORIES= biology python CATEGORIES= biology python
MASTER_SITES= PYPI MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org MAINTAINER= yuri@FreeBSD.org
COMMENT= Python binding for Prodigal, an ORF finder for genomes and metagenomes COMMENT= Python binding for Prodigal, an ORF finder for genomes and metagenomes
WWW= https://github.com/althonos/pyrodigal/ WWW= https://pyrodigal.readthedocs.io/en/stable/ \
https://github.com/althonos/pyrodigal/
LICENSE= GPLv3 LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/COPYING LICENSE_FILE= ${WRKSRC}/COPYING
BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cython3>0:lang/cython3@${PY_FLAVOR} BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cython3>0:lang/cython3@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}scikit-build-core>0:devel/py-scikit-build-core@${PY_FLAVOR}
TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}archspec>0:devel/py-archspec@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}archspec>0:devel/py-archspec@${PY_FLAVOR}
USES= python USES= cmake:indirect python
USE_PYTHON= distutils concurrent autoplist pytest # cython: cython3 isn't yet supported by python.mk USE_PYTHON= pep517 concurrent autoplist pytest # cython: cython3 isn't yet supported by python.mk
TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}
post-build: xpost-build:
@cd ${BUILD_WRKSRC} && ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} setup.py build_ext --inplace @cd ${BUILD_WRKSRC} && ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} setup.py build_ext --inplace
post-install: post-install:
@${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pyrodigal/lib${PYTHON_EXT_SUFFIX}.so @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pyrodigal/lib${PYTHON_EXT_SUFFIX}.so
do-test: do-test: # as of 3.6.3 this doesn't work: https://github.com/althonos/pyrodigal/issues/63
@cd ${TEST_WRKSRC} && ${SETENV} ${TEST_ENV} ${PYTHON_CMD} -m unittest discover -vv @cd ${TEST_WRKSRC} && ${SETENV} ${TEST_ENV} ${PYTHON_CMD} -m unittest discover -vv
.include <bsd.port.mk> .include <bsd.port.mk>

6
biology/py-pyrodigal/distinfo
View file

@ -1,3 +1,3 @@
TIMESTAMP = 1725511908 TIMESTAMP = 1731398873
SHA256 (pyrodigal-3.5.2.tar.gz) = 2a40eb6113e720ada51c326958b295944cdc33ecee9f25d5bad4e9a8e6e6f7f5 SHA256 (pyrodigal-3.6.3.tar.gz) = 3e226f743c960d4d30c46ae6868aff7e2a6b98f8d837cfbd2637568569b21f78
SIZE (pyrodigal-3.5.2.tar.gz) = 1857311 SIZE (pyrodigal-3.6.3.tar.gz) = 3589356