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biology/checkm: update 1.2.0 → 1.2.2

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PR:	278537
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Andrey Korobkov 2024-04-23 01:39:42 -07:00 • committed by Yuri Victorovich
parent da0bf6fe7e
commit 7336b01df9
3 changed files with 15 additions and 15 deletions
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3
biology/checkm/Makefile
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@ -1,7 +1,6 @@
PORTNAME= CheckM PORTNAME= CheckM
DISTVERSIONPREFIX= v DISTVERSIONPREFIX= v
DISTVERSION= 1.2.0 DISTVERSION= 1.2.2
PORTREVISION= 1
CATEGORIES= biology python CATEGORIES= biology python
MAINTAINER= yuri@FreeBSD.org MAINTAINER= yuri@FreeBSD.org

6
biology/checkm/distinfo
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@ -1,3 +1,3 @@
TIMESTAMP = 1651427292 TIMESTAMP = 1713784123
SHA256 (Ecogenomics-CheckM-v1.2.0_GH0.tar.gz) = 9d2f51409a72e90f1b59c811fa4d8b430051683ca0f3001aa770003f9201cd71 SHA256 (Ecogenomics-CheckM-v1.2.2_GH0.tar.gz) = a748b94e93f8d5fecfd0d5b3f17fcb119b25d4b45217e047b2fd742b21e74c0e
SIZE (Ecogenomics-CheckM-v1.2.0_GH0.tar.gz) = 1017160 SIZE (Ecogenomics-CheckM-v1.2.2_GH0.tar.gz) = 1017249

21
biology/checkm/pkg-descr
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@ -1,10 +1,11 @@
CheckM provides a set of tools for assessing the quality of genomes recovered CheckM provides a set of tools for assessing the quality of genomes
from isolates, single cells, or metagenomes. It provides robust estimates of recovered from isolates, single cells, or metagenomes.
genome completeness and contamination by using collocated sets of genes that It provides robust estimates of genome completeness and contamination
are ubiquitous and single-copy within a phylogenetic lineage. Assessment of by using collocated sets of genes that are ubiquitous and single-copy
genome quality can also be examined using plots depicting key genomic within a phylogenetic lineage.
characteristics (e.g., GC, coding density) which highlight sequences outside Assessment of genome quality can also be examined using plots depicting
the expected distributions of a typical genome. CheckM also provides tools for key genomic characteristics (e.g., GC, coding density) which highlight
identifying genome bins that are likely candidates for merging based on marker sequences outside the expected distributions of a typical genome.
set compatibility, similarity in genomic characteristics, and proximity within CheckM also provides tools for identifying genome bins that are likely
a reference genome tree. candidates for merging based on marker set compatibility, similarity in
genomic characteristics, and proximity within a reference genome tree.