math/pdal: Update to 2.8.4

databases/grass8/Makefile

@@ -1,5 +1,6 @@
 PORTNAME=	grass
 DISTVERSION=	8.4.1
+PORTREVISION=	1
 CATEGORIES=	databases geography
 MASTER_SITES=	https://grass.osgeo.org/%SUBDIR%/ \
 		http://grass.cict.fr/%SUBDIR%/ \

graphics/qgis-ltr/Makefile

@@ -1,5 +1,6 @@
 PORTNAME=	qgis
 DISTVERSION=	3.40.5
+PORTREVISION=	1
 CATEGORIES=	graphics geography
 MASTER_SITES=	https://qgis.org/downloads/
 PKGNAMESUFFIX=	-ltr

graphics/qgis/Makefile

@@ -1,6 +1,6 @@
 PORTNAME=	qgis
 DISTVERSION=	3.42.1
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	graphics geography
 MASTER_SITES=	https://qgis.org/downloads/
 

math/mdal/Makefile

@@ -1,7 +1,7 @@
 PORTNAME=	mdal
 DISTVERSIONPREFIX=	release-
 DISTVERSION=	1.2.0
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	math geography
 
 MAINTAINER=	wen@FreeBSD.org

math/pdal/Makefile

@@ -1,6 +1,5 @@
 PORTNAME=	pdal
-DISTVERSION=	2.7.2
+DISTVERSION=	2.8.4
-PORTREVISION=	6
 CATEGORIES=	math databases graphics
 MASTER_SITES=	https://github.com/PDAL/PDAL/releases/download/${DISTVERSION}/
 DISTNAME=	${PORTNAME}-${DISTVERSION}-src

math/pdal/distinfo

@@ -1,3 +1,3 @@
-TIMESTAMP = 1724912712
+TIMESTAMP = 1743790534
-SHA256 (pdal-2.7.2-src.tar.bz2) = f6ae0f3dc012b19c70dde2361799ecac0cdcbeb9cad5cfd96313c9fdc8608f32
+SHA256 (pdal-2.8.4-src.tar.bz2) = c27dc79af0b26f9cb3209b694703e9d576f1b0c8c05b36206fd5e310494e75b5
-SIZE (pdal-2.7.2-src.tar.bz2) = 87431434
+SIZE (pdal-2.8.4-src.tar.bz2) = 86725389

math/pdal/files/patch-CMakeLists.txt

@@ -1,11 +0,0 @@
---- CMakeLists.txt.orig	2024-08-29 07:07:08 UTC
-+++ CMakeLists.txt
-@@ -356,7 +356,7 @@ install(DIRECTORY ${PDAL_FILTERS_DIR}/
- #    PATTERN "private" EXCLUDE
- )
- 
--install(FILES ${DIMENSION_OUTFILE} ${pdal_features_hpp}/
-+install(FILES ${DIMENSION_OUTFILE} ${pdal_features_hpp}
-   DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}/pdal"
-     PERMISSIONS
-         GROUP_EXECUTE WORLD_EXECUTE OWNER_EXECUTE

math/pdal/files/patch-apps_CMakeLists.txt

@@ -1,11 +0,0 @@
---- apps/CMakeLists.txt.orig	2024-01-31 13:44:27 UTC
-+++ apps/CMakeLists.txt
-@@ -62,7 +62,7 @@ install(FILES ${CMAKE_CURRENT_BINARY_DIR}/pdal.pc
- configure_file(${CMAKE_CURRENT_SOURCE_DIR}/pdal.pc.in
-                ${CMAKE_CURRENT_BINARY_DIR}/pdal.pc @ONLY)
- install(FILES ${CMAKE_CURRENT_BINARY_DIR}/pdal.pc
--    DESTINATION "${PDAL_LIB_INSTALL_DIR}/pkgconfig/"
-+    DESTINATION "${CMAKE_INSTALL_PREFIX}/libdata/pkgconfig/"
-     PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)
- 
- configure_file("${CMAKE_CURRENT_SOURCE_DIR}/pdal-config.in"

math/pdal/files/patch-vendor_kazhdan_MyTime.h

@@ -1,10 +0,0 @@
---- vendor/kazhdan/MyTime.h.orig	2018-04-06 19:43:22 UTC
-+++ vendor/kazhdan/MyTime.h
-@@ -30,7 +30,6 @@ DAMAGE.
- #define MY_TIME_INCLUDED
- 
- #include <string.h>
--#include <sys/timeb.h>
- #ifndef WIN32
- #include <sys/time.h>
- #endif // WIN32

math/pdal/files/patch-vendor_kazhdan_Ply.h

@@ -1,20 +0,0 @@
---- vendor/kazhdan/Ply.h.orig	2024-06-29 01:37:43 UTC
-+++ vendor/kazhdan/Ply.h
-@@ -317,7 +317,7 @@ class PlyOrientedVertex (public)
- 	PlyOrientedVertex( void ) { ; }
- 	PlyOrientedVertex( Point3D< Real > p , Point3D< Real > n ) : point(p) , normal(n) { ; }
-   	PlyOrientedVertex operator + ( PlyOrientedVertex p ) const { return PlyOrientedVertex( point+p.point , normal+p.normal ); }
--	PlyOrientedVertex operator - ( PlyOrientedVertex p ) const { return PlyOrientedVertex( point-p.value , normal-p.normal ); }
-+	PlyOrientedVertex operator - ( PlyOrientedVertex p ) const { return PlyOrientedVertex( point-p.point , normal-p.normal ); }
- 	template< class _Real > PlyOrientedVertex operator * ( _Real s ) const { return PlyOrientedVertex( point*s , normal*s ); }
- 	template< class _Real > PlyOrientedVertex operator / ( _Real s ) const { return PlyOrientedVertex( point/s , normal/s ); }
- 	PlyOrientedVertex& operator += ( PlyOrientedVertex p ) { point += p.point , normal += p.normal ; return *this; }
-@@ -363,7 +363,7 @@ class PlyColorVertex (public)
- 		}
- 
- 	  	_PlyColorVertex operator + ( _PlyColorVertex p ) const { return _PlyColorVertex( point+p.point , color+p.color ); }
--		_PlyColorVertex operator - ( _PlyColorVertex p ) const { return _PlyColorVertex( point-p.value , color-p.color ); }
-+		_PlyColorVertex operator - ( _PlyColorVertex p ) const { return _PlyColorVertex( point-p.point , color-p.color ); }
- 		template< class _Real > _PlyColorVertex operator * ( _Real s ) const { return _PlyColorVertex( point*s , color*s ); }
- 		template< class _Real > _PlyColorVertex operator / ( _Real s ) const { return _PlyColorVertex( point/s , color/s ); }
- 		_PlyColorVertex& operator += ( _PlyColorVertex p ) { point += p.point , color += p.color ; return *this; }

math/pdal/files/patch-vendor_kazhdan_SparseMatrix.h

@@ -1,11 +0,0 @@
---- vendor/kazhdan/SparseMatrix.h.orig	2024-06-29 01:37:43 UTC
-+++ vendor/kazhdan/SparseMatrix.h
-@@ -67,8 +67,6 @@ template<class T> class SparseMatrix (public)
- 	SparseMatrix( const SparseMatrix& M );
- 	~SparseMatrix();
- 
--	void SetZero();
--
- 	SparseMatrix<T>& operator = (const SparseMatrix<T>& M);
- 
- 	SparseMatrix<T> operator * (const T& V) const;

math/pdal/files/patch-vendor_kazhdan_SparseMatrix.inl

@@ -1,16 +0,0 @@
---- vendor/kazhdan/SparseMatrix.inl.orig	2024-06-29 01:37:43 UTC
-+++ vendor/kazhdan/SparseMatrix.inl
-@@ -188,13 +188,6 @@ void SparseMatrix< T >::SetRowSize( int row , int coun
-     }
- }
- 
--
--template<class T>
--void SparseMatrix<T>::SetZero()
--{
--    Resize(this->m_N, this->m_M);
--}
--
- template<class T>
- SparseMatrix<T> SparseMatrix<T>::operator * (const T& V) const
- {

math/pdal/pkg-plist

@@ -72,6 +72,7 @@ include/pdal/filters/ELMFilter.hpp
 include/pdal/filters/EigenvaluesFilter.hpp
 include/pdal/filters/EstimateRankFilter.hpp
 include/pdal/filters/ExpressionFilter.hpp
+include/pdal/filters/ExpressionStatsFilter.hpp
 include/pdal/filters/FaceRasterFilter.hpp
 include/pdal/filters/FarthestPointSamplingFilter.hpp
 include/pdal/filters/FerryFilter.hpp
@@ -91,6 +92,7 @@ include/pdal/filters/IQRFilter.hpp
 include/pdal/filters/InfoFilter.hpp
 include/pdal/filters/IterativeClosestPoint.hpp
 include/pdal/filters/LOFFilter.hpp
+include/pdal/filters/LabelDuplicatesFilter.hpp
 include/pdal/filters/LiTreeFilter.hpp
 include/pdal/filters/LloydKMeansFilter.hpp
 include/pdal/filters/LocateFilter.hpp
@@ -327,20 +329,20 @@ lib/cmake/PDAL/PDALTargets-%%CMAKE_BUILD_TYPE%%.cmake
 lib/cmake/PDAL/PDALTargets.cmake
 lib/cmake/PDAL/pluginmacros.cmake
 lib/libpdal_plugin_kernel_fauxplugin.so
-lib/libpdal_plugin_kernel_fauxplugin.so.17
+lib/libpdal_plugin_kernel_fauxplugin.so.18
-lib/libpdal_plugin_kernel_fauxplugin.so.17.1.0
+lib/libpdal_plugin_kernel_fauxplugin.so.18.1.0
 %%ICEBRIDGE%%lib/libpdal_plugin_reader_icebridge.so
-%%ICEBRIDGE%%lib/libpdal_plugin_reader_icebridge.so.17
+%%ICEBRIDGE%%lib/libpdal_plugin_reader_icebridge.so.18
-%%ICEBRIDGE%%lib/libpdal_plugin_reader_icebridge.so.17.1.0
+%%ICEBRIDGE%%lib/libpdal_plugin_reader_icebridge.so.18.1.0
 %%PGPOINTCLOUD%%lib/libpdal_plugin_reader_pgpointcloud.so
-%%PGPOINTCLOUD%%lib/libpdal_plugin_reader_pgpointcloud.so.17
+%%PGPOINTCLOUD%%lib/libpdal_plugin_reader_pgpointcloud.so.18
-%%PGPOINTCLOUD%%lib/libpdal_plugin_reader_pgpointcloud.so.17.1.0
+%%PGPOINTCLOUD%%lib/libpdal_plugin_reader_pgpointcloud.so.18.1.0
 %%PGPOINTCLOUD%%lib/libpdal_plugin_writer_pgpointcloud.so
-%%PGPOINTCLOUD%%lib/libpdal_plugin_writer_pgpointcloud.so.17
+%%PGPOINTCLOUD%%lib/libpdal_plugin_writer_pgpointcloud.so.18
-%%PGPOINTCLOUD%%lib/libpdal_plugin_writer_pgpointcloud.so.17.1.0
+%%PGPOINTCLOUD%%lib/libpdal_plugin_writer_pgpointcloud.so.18.1.0
 lib/libpdalcpp.so
-lib/libpdalcpp.so.17
+lib/libpdalcpp.so.18
-lib/libpdalcpp.so.17.1.0
+lib/libpdalcpp.so.18.1.0
 libdata/pkgconfig/pdal.pc
 %%BASH%%share/bash-completion/completions/pdal
 @dir include/pdal/filters/private/csf

math/py-pdal/Makefile

@@ -1,5 +1,6 @@
 PORTNAME=	pdal
 DISTVERSION=	3.4.5
+PORTREVISION=	1
 CATEGORIES=	math python
 MASTER_SITES=	PYPI
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}

math/saga/Makefile

@@ -1,6 +1,6 @@
 PORTNAME=	saga
 PORTVERSION=	9.8.0
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	math
 MASTER_SITES=	SF/saga-gis/SAGA%20-%20${PORTVERSION:C/\.[[:digit:]]\.[[:digit:]]*$//}/SAGA%20-%20${PORTVERSION}
 

science/paraview/Makefile

@@ -1,6 +1,6 @@
 PORTNAME=	paraview
 DISTVERSION=	${PARAVIEW_VER}.1
-PORTREVISION=	18
+PORTREVISION=	19
 CATEGORIES=	science graphics
 MASTER_SITES=	http://www.paraview.org/files/v${PARAVIEW_VER}/
 DISTNAME=	ParaView-v${PORTVERSION}