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biology/abyss: update 2.3.9 → 2.3.10

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PR:	282540
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Älven 2024-11-04 12:35:32 -08:00 • committed by Yuri Victorovich
parent 9344fb1da4
commit 41b83c53f8
2 changed files with 10 additions and 9 deletions
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13
biology/abyss/Makefile
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@ -1,10 +1,10 @@
PORTNAME= abyss PORTNAME= abyss
DISTVERSION= 2.3.9 DISTVERSION= 2.3.10
CATEGORIES= biology CATEGORIES= biology
MAINTAINER= yuri@FreeBSD.org MAINTAINER= yuri@FreeBSD.org
COMMENT= Assembly By Short Sequences: parallel, paired-end sequence assembler COMMENT= Assembly By Short Sequences: parallel, paired-end sequence assembler
WWW= https://www.bcgsc.ca/resources/software/abyss WWW= https://www.bcgsc.ca/resources/software/abyss/
LICENSE= GPLv3 LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/LICENSE LICENSE_FILE= ${WRKSRC}/LICENSE
@ -33,15 +33,16 @@ make_CMD= ${PREFIX}/bin/gmake
GNU_CONFIGURE= yes GNU_CONFIGURE= yes
CONFIGURE_ARGS= --without-sparsehash # configure fails to find std::hash, reported to the ML: https://groups.google.com/forum/#!topic/trans-abyss/SZDBKR5bKxs CONFIGURE_ARGS= --without-sparsehash # configure fails to find std::hash, reported to the ML: https://groups.google.com/forum/#!topic/trans-abyss/SZDBKR5bKxs
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
TEST_TARGET= check # tests fail to compile, see https://github.com/bcgsc/abyss/issues/453 TEST_TARGET= check
OPTIONS_DEFINE= DOCS PORTSCOUT= limit:^[0-9\.]*$$ # to ignore alpha-numeric tags
PORTDOCS= * PORTDOCS= *
PORTSCOUT= limit:^[0-9\.]*$$ # to ignore alpha-numeric tags OPTIONS_DEFINE= DOCS
TESTING_UNSAFE= yes # tests fail to compile, see https://github.com/bcgsc/abyss/issues/453
.include <bsd.port.pre.mk> .include <bsd.port.pre.mk>

6
biology/abyss/distinfo
View file

@ -1,3 +1,3 @@
TIMESTAMP = 1726117023 TIMESTAMP = 1730727252
SHA256 (bcgsc-abyss-2.3.9_GH0.tar.gz) = 68e0bb05526a1daaeea91e036fb227e7adde938fa2eeaa7c7225997c00e367d5 SHA256 (bcgsc-abyss-2.3.10_GH0.tar.gz) = 08ff30002113280ae75228eb1e29cf835318c7ef783ccf24fbe7350d49b4043c
SIZE (bcgsc-abyss-2.3.9_GH0.tar.gz) = 1323783 SIZE (bcgsc-abyss-2.3.10_GH0.tar.gz) = 1323490