sync/ports
1
0
Fork 0
mirror of https://git.freebsd.org/ports.git synced 2025-04-28 01:26:39 -04:00
Code Issues Projects Releases Packages Wiki Activity Actions

biology/bbmap: Update to 39.15

Browse source 
Add bitbucket link to WWW for some level of change tracking
Release highlights:
    https://bitbucket.org/berkeleylab/jgi-bbtools/commits/branch/master

Reported by:    portscout
This commit is contained in:
Jason W. Bacon 2025-01-16 06:35:49 -06:00
parent d19f1a5a53
commit 25e2eac767
3 changed files with 16 additions and 5 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

5
biology/bbmap/Makefile
View file

@ -1,5 +1,5 @@
PORTNAME= bbmap
DISTVERSION= 39.14
DISTVERSION= 39.15
CATEGORIES= biology java
MASTER_SITES= SF/bbmap/
DISTNAME= BBMap_${PORTVERSION}
@ -7,7 +7,8 @@ DISTNAME= BBMap_${PORTVERSION}
MAINTAINER= jwb@FreeBSD.org
COMMENT= BBMap short read aligner, and other bioinformatic tools
WWW= https://jgi.doe.gov/data-and-tools/bbtools/ \
https://sourceforge.net/projects/bbmap/
https://sourceforge.net/projects/bbmap/ \
https://bitbucket.org/berkeleylab/jgi-bbtools/src/master/
LICENSE= BSD3CLAUSE
LICENSE_FILE= ${WRKSRC}/license.txt

6
biology/bbmap/distinfo
View file

@ -1,3 +1,3 @@
TIMESTAMP = 1736804942
SHA256 (BBMap_39.14.tar.gz) = 87f7746dee28629afb368530457e7d2dfaabb4f8c5967dba4269d9a724f78e30
SIZE (BBMap_39.14.tar.gz) = 12469315
TIMESTAMP = 1737030117
SHA256 (BBMap_39.15.tar.gz) = b6698469a2a90f4930537c575ff1f70332f88a933dd5e286c83ea0ff30802344
SIZE (BBMap_39.15.tar.gz) = 12498916

10
biology/bbmap/pkg-plist
View file

@ -533,11 +533,21 @@ libexec/bbmap/webcheck.sh
%%JAVAJARDIR%%/bbmap/bin/Cluster.java
%%JAVAJARDIR%%/bbmap/bin/Contig.class
%%JAVAJARDIR%%/bbmap/bin/Contig.java
%%JAVAJARDIR%%/bbmap/bin/ContigRenamer$ProcessThread.class
%%JAVAJARDIR%%/bbmap/bin/ContigRenamer$Scaf.class
%%JAVAJARDIR%%/bbmap/bin/ContigRenamer.class
%%JAVAJARDIR%%/bbmap/bin/ContigRenamer.java
%%JAVAJARDIR%%/bbmap/bin/DataLoader.class
%%JAVAJARDIR%%/bbmap/bin/DataLoader.java
%%JAVAJARDIR%%/bbmap/bin/FileRenamer.class
%%JAVAJARDIR%%/bbmap/bin/FileRenamer.java
%%JAVAJARDIR%%/bbmap/bin/QuickBin$ProcessThread.class
%%JAVAJARDIR%%/bbmap/bin/QuickBin.class
%%JAVAJARDIR%%/bbmap/bin/QuickBin.java
%%JAVAJARDIR%%/bbmap/bin/RandomReadsMG$Genome.class
%%JAVAJARDIR%%/bbmap/bin/RandomReadsMG$ProcessThread.class
%%JAVAJARDIR%%/bbmap/bin/RandomReadsMG.class
%%JAVAJARDIR%%/bbmap/bin/RandomReadsMG.java
%%JAVAJARDIR%%/bbmap/bin/SimilarityMeasures.class
%%JAVAJARDIR%%/bbmap/bin/SimilarityMeasures.java
%%JAVAJARDIR%%/bbmap/bin/SketchRecord.class