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biology/fasttree: Update to 2.1.11

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Add -trans option for amino acid alignments
Changes: https://microbesonline.org/fasttree/ChangeLog

PR:             283035
Reported by:    alster@vinterdalen.se
This commit is contained in:
Jason W. Bacon 2024-12-03 08:52:16 -06:00
parent aef82c04c9
commit 12b5c3c8f1
3 changed files with 12 additions and 12 deletions
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14
biology/fasttree/Makefile
View file

@ -1,23 +1,23 @@
PORTNAME= FastTree PORTNAME= FastTree
DISTVERSION= 2.1.10 DISTVERSION= 2.1.11
PORTREVISION= 5
CATEGORIES= biology CATEGORIES= biology
MASTER_SITES= http://www.microbesonline.org/fasttree/ MASTER_SITES= https://www.microbesonline.org/fasttree/
EXTRACT_SUFX= .c EXTRACT_SUFX= .c
MAINTAINER= jwb@FreeBSD.org MAINTAINER= jwb@FreeBSD.org
COMMENT= Approximately-maximum-likelihood phylogenetic trees from alignments COMMENT= Approximately-maximum-likelihood phylogenetic trees from alignments
WWW= http://www.microbesonline.org/fasttree/ WWW= https://www.microbesonline.org/fasttree/
LICENSE= GPLv2+ LICENSE= GPLv2+
NO_WRKSUBDIR= yes
PLIST_FILES= bin/FastTree
.if !exists(/usr/include/omp.h) .if !exists(/usr/include/omp.h)
USES= compiler:gcc-c++11-lib USES= compiler:gcc-c++11-lib
.endif .endif
NO_WRKSUBDIR= yes
PLIST_FILES= bin/FastTree
do-extract: do-extract:
@${CP} ${DISTDIR}/${DISTFILES} ${WRKSRC} @${CP} ${DISTDIR}/${DISTFILES} ${WRKSRC}
@${CP} ${FILESDIR}/Makefile ${WRKSRC} @${CP} ${FILESDIR}/Makefile ${WRKSRC}

6
biology/fasttree/distinfo
View file

@ -1,3 +1,3 @@
TIMESTAMP = 1512317739 TIMESTAMP = 1732861256
SHA256 (FastTree-2.1.10.c) = 54cb89fc1728a974a59eae7a7ee6309cdd3cddda9a4c55b700a71219fc6e926d SHA256 (FastTree-2.1.11.c) = 9026ae550307374be92913d3098f8d44187d30bea07902b9dcbfb123eaa2050f
SIZE (FastTree-2.1.10.c) = 390916 SIZE (FastTree-2.1.11.c) = 395543

4
biology/fasttree/files/patch-FastTree-2.1.10.c
View file

@ -1,5 +1,5 @@
--- FastTree-2.1.10.c.orig 2017-12-04 15:09:11 UTC --- FastTree-2.1.11.c.orig 2017-12-04 15:09:11 UTC
+++ FastTree-2.1.10.c +++ FastTree-2.1.11.c
@@ -8759,7 +8759,7 @@ double pnorm(double x) @@ -8759,7 +8759,7 @@ double pnorm(double x)
void *mymalloc(size_t sz) { void *mymalloc(size_t sz) {