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- Properly list run-time dependencies in RUN_DEPENDS in Makefile.
- Deploy %%PERL_VER%% and %%PERL_ARCH%% pragmas consistently throughout pkg-plist. (Ouch, that was embarrassing.) - Bump PORTREVISION due to the above. - Update my email address and the project's URL in pkg-descr.
This commit is contained in:
Johann Visagie
parent
98311ec109
commit
102c91c252
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=46170
3 changed files with 46 additions and 40 deletions
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@ -7,6 +7,7 @@
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PORTNAME= bioperl
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PORTVERSION= 0.7.1
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PORTREVISION= 1
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CATEGORIES= biology perl5
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MASTER_SITES= ftp://bioperl.org/pub/DIST/ \
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http://bioperl.org/Core/Latest/ \
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@ -17,6 +18,8 @@ DISTFILES= ${DISTNAME}${EXTRACT_SUFX}
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MAINTAINER= wjv@FreeBSD.org
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# These are all run-time dependencies, but listing them in ${BUILD_DEPENDS}
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# prevents a flood of build-time warnings.
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BUILD_DEPENDS= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/Ace.pm:${PORTSDIR}/biology/p5-AcePerl \
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${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/XML/Parser.pm:${PORTSDIR}/textproc/p5-XML-Parser \
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${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/File/Temp.pm:${PORTSDIR}/devel/p5-File-Temp \
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@ -27,6 +30,7 @@ BUILD_DEPENDS= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/Ace.pm:
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${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/XML/Node.pm:${PORTSDIR}/textproc/p5-XML-Node \
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${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/XML/Parser/PerlSAX.pm:${PORTSDIR}/textproc/p5-libxml \
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${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/XML/Writer.pm:${PORTSDIR}/textproc/p5-XML-Writer
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RUN_DEPENDS= ${BUILD_DEPENDS}
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PERL_CONFIGURE= YES
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@ -44,9 +48,11 @@ EXT_WRKSRC= ${WRKDIR}/bioperl-ext-06/Bio/Ext/Align
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.if defined(WITH_CORBA_CLIENT)
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BUILD_DEPENDS+= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/CORBA/ORBit.pm:${PORTSDIR}/devel/p5-ORBit
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RUN_DEPENDS+= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/CORBA/ORBit.pm:${PORTSDIR}/devel/p5-ORBit
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.endif
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.if defined(WITH_CORBA_SERVER)
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BUILD_DEPENDS+= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/CORBA/ORBit.pm:${PORTSDIR}/devel/p5-ORBit
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RUN_DEPENDS+= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/CORBA/ORBit.pm:${PORTSDIR}/devel/p5-ORBit
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.endif
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.if defined(WITH_GUI)
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RUN_DEPENDS+= ptksh:${PORTSDIR}/x11-toolkits/p5-Tk
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@ -6,8 +6,8 @@ Bioperl Project. It forms the basis of a large number of bioinformatics and
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genomics applications.
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(For an interesting aside on "How Perl saved the Human Genome Project", see
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http://bio.perl.org/GetStarted/tpj_ls_bio.html)
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http://bioperl.org/GetStarted/tpj_ls_bio.html)
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WWW: http://bio.perl.org/
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WWW: http://bioperl.org/
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-- Johann Visagie <johann@egenetics.com>
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-- Johann Visagie <wjv@FreeBSD.org>
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@ -1,36 +1,36 @@
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%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/Base.pm
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%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/Client.pm
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%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/ORB.pm
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%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/PrimarySeq.pm
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%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/Seq.pm
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%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/SeqFeature.pm
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%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/DB/Biocorba.pm
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%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/SeqIO/biocorba.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/AnonymousSeq.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/Base.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/BioEnv.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/PrimarySeq.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/PrimarySeqDB.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/PrimarySeqIterator.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/PrimarySeqVector.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/Seq.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/SeqDB.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/SeqFeature.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/SeqFeatureIterator.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/SeqFeatureVector.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/Server.pm
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%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/AnnotMap.pm
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%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/BioTkPerl8_1.pm
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%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/GO_Browser.pm
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%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/HitDisplay.pm
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%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/README
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%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/SeqCanvas.pm
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%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/Tkpsh.pl
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%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/bioTk_Map.pm
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%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/bioTk_SeqSubs.pm
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%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/bioTk_Sequence.pm
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%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/bioTk_Utilities.pm
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%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/mach/auto/Bio/Tk/.packlist
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%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaClient/Base.pm
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%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaClient/Client.pm
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%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaClient/ORB.pm
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%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaClient/PrimarySeq.pm
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%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaClient/Seq.pm
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%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaClient/SeqFeature.pm
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%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/Biocorba.pm
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%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/biocorba.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/AnonymousSeq.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/Base.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/BioEnv.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/PrimarySeq.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/PrimarySeqDB.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/PrimarySeqIterator.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/PrimarySeqVector.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/Seq.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/SeqDB.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/SeqFeature.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/SeqFeatureIterator.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/SeqFeatureVector.pm
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%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/Server.pm
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%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/AnnotMap.pm
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%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/BioTkPerl8_1.pm
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%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/GO_Browser.pm
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%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/HitDisplay.pm
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%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/README
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%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/SeqCanvas.pm
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%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/Tkpsh.pl
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%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/bioTk_Map.pm
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%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/bioTk_SeqSubs.pm
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%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/bioTk_Sequence.pm
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%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/bioTk_Utilities.pm
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%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Tk/.packlist
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lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Bio/Ext/Align.pm
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lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/.packlist
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lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Ext/Align/.packlist
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@ -213,10 +213,10 @@ lib/perl5/site_perl/%%PERL_VER%%/biodesign.pod
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lib/perl5/site_perl/%%PERL_VER%%/bioperl.pod
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lib/perl5/site_perl/%%PERL_VER%%/biostart.pod
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lib/perl5/site_perl/%%PERL_VER%%/bptutorial.pl
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%%PLIST_GUI%%@dirrm lib/perl5/site_perl/5.6.0/mach/auto/Bio/Tk
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%%PLIST_GUI%%@dirrm lib/perl5/site_perl/5.6.0/Bio/Tk
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%%PLIST_CORBA_SERVER%%@dirrm lib/perl5/site_perl/5.6.0/Bio/CorbaServer
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%%PLIST_CORBA_CLIENT%%@dirrm lib/perl5/site_perl/5.6.0/Bio/CorbaClient
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%%PLIST_GUI%%@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Tk
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%%PLIST_GUI%%@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk
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%%PLIST_CORBA_SERVER%%@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer
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%%PLIST_CORBA_CLIENT%%@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaClient
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@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/IO
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@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation
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@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Sim4
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