math/rpy2: Update 2.7.8 -> 2.9.4; Move to math/py-rpy2

Port changes:
* Add LICENSE_FILE
* Update dependencies
* Support for python-2 is dropped
* Update WWW to https

MOVED

@@ -10498,3 +10498,4 @@ x11-themes/qt5-style-Kvantum|x11-themes/Kvantum@qt5|2018-08-26|Moved to flavored
 devel/gps||2018-08-28|Has expired: Depends on obsolete LLVM 3.8.
 net-mgmt/ocsinventory-ng|net-mgmt/ocsinventory-server|2018-08-26|split port
 www/py-buku|www/buku|2018-09-01|Moved to correct directory, port is not a python library
+math/rpy2|math/py-rpy2|2018-09-01|Moved to correct directory, this is a python library

math/Makefile

@@ -723,6 +723,7 @@
     SUBDIR += py-pyvtk
     SUBDIR += py-random2
     SUBDIR += py-roman
+    SUBDIR += py-rpy2
     SUBDIR += py-scientific
     SUBDIR += py-scikit-umfpack
     SUBDIR += py-seaborn
@@ -764,7 +765,6 @@
     SUBDIR += rocs-kde4
     SUBDIR += rpcalc
     SUBDIR += rpy
-    SUBDIR += rpy2
     SUBDIR += rubygem-algebra
     SUBDIR += rubygem-expression_parser
     SUBDIR += rubygem-fftw3

math/py-rpy2/Makefile

@@ -0,0 +1,31 @@
+# Created by: ijliao
+# $FreeBSD$
+
+PORTNAME=	rpy2
+DISTVERSION=	2.9.4
+CATEGORIES=	math
+MASTER_SITES=	CHEESESHOP
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	ports@FreeBSD.org
+COMMENT=	Python interface to the R Programming Language
+
+LICENSE=	GPLv2+
+LICENSE_FILE=	${WRKSRC}/gpl-2.0.txt
+
+BUILD_DEPENDS=	${PYNUMPY}
+LIB_DEPENDS=	libR.so:math/R \
+		libicui18n.so:devel/icu \
+		libomp.so:devel/openmp \
+		libpcre.so:devel/pcre
+RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}Jinja2>0:devel/py-Jinja2@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} \
+		${PYNUMPY}
+
+USES=		fortran python:3.4+ readline
+USE_PYTHON=	distutils autoplist
+
+post-install:
+	@${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/rpy2/rinterface/*.so
+
+.include <bsd.port.mk>

math/py-rpy2/distinfo

@@ -0,0 +1,3 @@
+TIMESTAMP = 1535812255
+SHA256 (rpy2-2.9.4.tar.gz) = be57f741d0c284b5d8785ab03dff0e829303e5ac30e548d5ceb46e05b168812e
+SIZE (rpy2-2.9.4.tar.gz) = 194620

math/py-rpy2/pkg-descr

@@ -9,4 +9,4 @@ rpy2 is a redesign and rewrite of rpy. It is providing a low-level interface
 to R, a proposed high-level interface, including wrappers to graphical
 libraries, as well as R-like structures and functions.
 
-WWW: http://rpy2.bitbucket.org/
+WWW: https://rpy2.bitbucket.org/

math/rpy2/Makefile

@@ -1,32 +0,0 @@
-# Created by: ijliao
-# $FreeBSD$
-
-PORTNAME=	rpy2
-PORTVERSION=	2.7.8
-PORTREVISION=	8
-CATEGORIES=	math
-MASTER_SITES=	CHEESESHOP
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Python interface to the R Programming Language
-
-LICENSE=	GPLv2+
-
-BUILD_DEPENDS=	${PYNUMPY}
-LIB_DEPENDS=	libR.so:math/R
-RUN_DEPENDS=	${PYNUMPY}
-
-USES=		fortran python readline
-USE_PYTHON=	distutils autoplist concurrent optsuffix
-LDFLAGS+=	-Wl,--as-needed
-
-pre-configure:
-	@(if [ ! -e ${LOCALBASE}/lib/R/lib/libR.so ] ; then \
-	${ECHO_MSG} "==> ${PKGNAME} requires math/R to be built with the" ; \
-	${ECHO_MSG} "==> LIBR option enabled." ; \
-	exit 1; fi)
-
-post-install:
-	${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/rpy2/rinterface/*.so
-
-.include <bsd.port.mk>

math/rpy2/distinfo

@@ -1,2 +0,0 @@
-SHA256 (rpy2-2.7.8.tar.gz) = 4f51bcdddea01a63e624f4b38de4f6b10a2466d82fd7e890791a07b06e51781d
-SIZE (rpy2-2.7.8.tar.gz) = 178334