mirror of
https://git.freebsd.org/ports.git
synced 2025-07-18 17:59:20 -04:00
- Update to 9.03.
PR: ports/172499 Submitted by: KATO Tsuguru <tkato432@yahoo.com>
This commit is contained in:
parent
3b850ce68d
commit
05e78fe84a
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=310361
5 changed files with 35 additions and 219 deletions
|
@ -2,36 +2,40 @@
|
|||
# $FreeBSD$
|
||||
|
||||
PORTNAME= t_coffee
|
||||
PORTVERSION= 5.68
|
||||
PORTVERSION= 9.03
|
||||
DISTVERSIONSUFFIX= .r1318
|
||||
CATEGORIES= biology
|
||||
MASTER_SITES= http://www.tcoffee.org/Packages/
|
||||
DISTNAME= T-COFFEE_distribution_Version_${PORTVERSION}
|
||||
MASTER_SITES= http://www.tcoffee.org/Packages/Stable/%SUBDIR%/
|
||||
MASTER_SITE_SUBDIR= Version_${PORTVERSION}${DISTVERSIONSUFFIX}
|
||||
DISTNAME= T-COFFEE_distribution_Version_${PORTVERSION}${DISTVERSIONSUFFIX}
|
||||
|
||||
MAINTAINER= ports@FreeBSD.org
|
||||
COMMENT= A multiple DNA or protein sequence alignment package
|
||||
|
||||
BUILD_DEPENDS= clustalw:${PORTSDIR}/biology/clustalw
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
LICENSE= GPLv2
|
||||
|
||||
RUN_DEPENDS= clustalw:${PORTSDIR}/biology/clustalw
|
||||
|
||||
OPTIONS_DEFINE= EXAMPLES
|
||||
|
||||
BUILD_WRKSRC= ${WRKSRC}/t_coffee_source
|
||||
MAKE_ENV= MV=${MV} USER_BIN=${PREFIX}/bin \
|
||||
CLUSTALW_4_TCOFFEE=${LOCALBASE}/bin/clustalw
|
||||
|
||||
USE_FORTRAN= yes
|
||||
MAKE_ENV= FCC="${FC} ${FFLAGS}"
|
||||
MAKEFILE= makefile
|
||||
MAKE_JOBS_SAFE= yes
|
||||
|
||||
PORTEXAMPLES= *
|
||||
PLIST_FILES= bin/TMalign bin/t_coffee
|
||||
|
||||
.include <bsd.port.options.mk>
|
||||
|
||||
do-install:
|
||||
${INSTALL_PROGRAM} ${WRKSRC}/bin/t_coffee ${PREFIX}/bin
|
||||
|
||||
post-install:
|
||||
.if !defined(NOPORTDOCS)
|
||||
@ ${MKDIR} ${DOCSDIR}/html
|
||||
${INSTALL_DATA} ${WRKSRC}/doc/* ${DOCSDIR}
|
||||
${INSTALL_DATA} ${WRKSRC}/license.txt ${DOCSDIR}
|
||||
${INSTALL_DATA} ${WRKSRC}/html/* ${DOCSDIR}/html
|
||||
.endif
|
||||
.if !defined(NOPORTEXAMPLES)
|
||||
@ ${MKDIR} ${EXAMPLESDIR}
|
||||
cd ${WRKSRC}/example && ${COPYTREE_SHARE} \* ${EXAMPLESDIR}
|
||||
(cd ${BUILD_WRKSRC} \
|
||||
&& ${INSTALL_PROGRAM} TMalign t_coffee ${PREFIX}/bin)
|
||||
.if ${PORT_OPTIONS:MEXAMPLES}
|
||||
@${MKDIR} ${EXAMPLESDIR}
|
||||
@(cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${EXAMPLESDIR})
|
||||
.endif
|
||||
|
||||
.include <bsd.port.mk>
|
||||
|
|
|
@ -1,2 +1,2 @@
|
|||
SHA256 (T-COFFEE_distribution_Version_5.68.tar.gz) = 137d188cef6f33a42cbd656482eb961d1588fef3091d2457ee0ef23fab16a6de
|
||||
SIZE (T-COFFEE_distribution_Version_5.68.tar.gz) = 2875438
|
||||
SHA256 (T-COFFEE_distribution_Version_9.03.r1318.tar.gz) = 5bb9a531a4036b741a8ff0fe19f3591a3f33bf7ac4f484e5329b1b5dd1fff43c
|
||||
SIZE (T-COFFEE_distribution_Version_9.03.r1318.tar.gz) = 3455629
|
||||
|
|
|
@ -1,8 +0,0 @@
|
|||
--- t_coffee_source/makefile.orig Tue Feb 7 15:11:00 2006
|
||||
+++ t_coffee_source/makefile Tue Feb 7 15:10:36 2006
|
||||
@@ -1,4 +1,4 @@
|
||||
-CC=cc
|
||||
+#CC=cc
|
||||
t_coffee: util_constraints_list.o util_job_handling.o util_dps.o util_domain_constraints_list.o util_analyse_constraints_list.o aln_convertion_util.o util_declare.o hsearch.o random.o util_make_tree.o util.o reformat_struc.o reformat.o aln_compare.o io_func.o pb_util_read_sequence.o pb_util_read_seq_util.o tree_util.o util_graph_maln.o util_dp_clean_maln.o util_dp_ssec_pwaln.o util_dp_sim.o util_dp_mm_nw.o util_dp_gotoh_nw.o util_dp_suboptimal_nw.o util_dp_cdna_fasta_nw.o util_dp_generic_fasta_nw.o util_ dp_fasta_nw.o util_dp_fasta_sw.o util_dp_gotoh_sw.o util_dp_est.o util_domain_dp_drivers.o util_dp_drivers.o util_domain_dp.o CUSTOM_evaluate_for_struc.o evaluate_for_struc.o evaluate_for_domain.o evaluate_dirichlet.o evaluate.o showpair.o fsa_dp.o pavie_dp.o t_coffee.o
|
||||
$(CC) -o t_coffee util_constraints_list.o util_job_handling.o util_dps.o util_domain_constraints_list.o util_analyse_constraints_list.o aln_convertion_util.o util_declare.o hsearch.o random.o util_make_tree.o util.o reformat_struc.o reformat.o aln_compare.o io_func.o pb_util_read_sequence.o pb_util_read_seq_util.o tree_util.o util_graph_maln.o util_dp_clean_maln.o util_dp_ssec_pwaln.o util_dp_sim.o util_dp_mm_nw.o util_dp_gotoh_nw.o util_dp_suboptimal_nw.o util_dp_cdna_fasta_nw.o util_dp_generic_fasta_ nw.o util_dp_fasta_nw.o util_dp_fasta_sw.o util_dp_gotoh_sw.o util_dp_est.o util_domain_dp_drivers.o util_dp_drivers.o util_domain_dp.o CUSTOM_evaluate_for_struc.o evaluate_for_struc.o evaluate_for_domain.o evaluate_dirichlet.o evaluate.o showpair.o fsa_dp.o pavie_dp.o t_coffee.o -lm
|
||||
mv t_coffee ../bin
|
10
biology/t_coffee/files/patch-dev3.c
Normal file
10
biology/t_coffee/files/patch-dev3.c
Normal file
|
@ -0,0 +1,10 @@
|
|||
--- t_coffee_source/dev3.c.orig 2012-07-13 02:06:31.000000000 +0900
|
||||
+++ t_coffee_source/dev3.c 2012-10-04 22:14:10.000000000 +0900
|
||||
@@ -3,6 +3,7 @@
|
||||
#include <math.h>
|
||||
#include <stdarg.h>
|
||||
#include <string.h>
|
||||
+#include <sys/types.h>
|
||||
#include <sys/sysctl.h>
|
||||
#include "dev3_lib_header.h"
|
||||
/******************************COPYRIGHT NOTICE*******************************/
|
|
@ -1,190 +0,0 @@
|
|||
bin/t_coffee
|
||||
%%PORTDOCS%%%%DOCSDIR%%/README4T-COFFEE
|
||||
%%PORTDOCS%%%%DOCSDIR%%/aln_compare.doc.txt
|
||||
%%PORTDOCS%%%%DOCSDIR%%/seq_reformat.doc.txt
|
||||
%%PORTDOCS%%%%DOCSDIR%%/t_coffee_technical.doc
|
||||
%%PORTDOCS%%%%DOCSDIR%%/t_coffee_technical.htm
|
||||
%%PORTDOCS%%%%DOCSDIR%%/t_coffee_technical.txt
|
||||
%%PORTDOCS%%%%DOCSDIR%%/t_coffee_tutorial.doc
|
||||
%%PORTDOCS%%%%DOCSDIR%%/t_coffee_tutorial.htm
|
||||
%%PORTDOCS%%%%DOCSDIR%%/t_coffee_tutorial.txt
|
||||
%%PORTDOCS%%%%DOCSDIR%%/license.txt
|
||||
%%PORTDOCS%%%%DOCSDIR%%/html/t_coffee.html
|
||||
%%PORTDOCS%%%%DOCSDIR%%/html/t_coffee4html.cgi
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/2seqs.fas
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/3d.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/3d.dnd
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/3d.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/3d.html
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/3d_sample2.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/3d_sample3.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/3d_sample4.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/b30.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/block1.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/block2.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cache
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/charge_relay_lib.tc_lib
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/clustalw_method.tc_method
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/combined_aln.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/combined_aln.aln.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/combined_aln.aln.html
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/command_line.txt
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/error_report.T-COFFEE
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/g0.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/x
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/g10.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/g15.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/g5.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/kinases.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/marna.tc_lib
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/new_profile1_pdb1.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/new_profile1_pdb1.html
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/newprf.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/newprf.html
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/p120.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/p250
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/p350.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/prf1.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/prf1.dnd
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/prf1.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/prf2.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/prf2.dnd
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/prf2.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/prf3.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/prf3.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/profile1_pdb1.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/profile1_pdb1.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/profile1_pdb1.html
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/seq.fas
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/profile1_pdb1_1.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/profile1_pdb1_1.html
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/profile2_pdb2.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/profile2_pdb2.dnd
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/profile2_pdb2.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/profile2_pdb2.html
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_aln1.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_aln1.dnd
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_aln1.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_aln1.tc_lib
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_aln1_1.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_aln1_2.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_aln2.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_aln2.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_aln2.msf
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_aln3.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_aln4.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_aln5.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_aln6.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_aln6.cache
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_aln6.html
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_aln7.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_aln7.cache_aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_dnaseq1.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_lib1.mocca_lib
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_lib1.tc_lib
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_lib2.tc_lib
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_lib3.tc_lib
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_lib4.tc_lib02
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_lib5.tc_lib
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_list1.lib_list
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_param_file.param
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_profile1.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_profile2.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_rnaseq1.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_seq1.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sv.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_seq1.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_seq2.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_seq3.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_seq4.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_seq5.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_seq6.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_seq7.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_seq8.seq
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_tree.dnd
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_tree2.dnd
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample_tree3.dnd
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases.small
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases.small.blosum62mt.sim_file
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases1_small.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases1_small.dnd
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases1_small.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases2_small.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases2_small.dnd
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases2_small.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_chain.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_large.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_large.code_name
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_large.coded.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_large.dnd
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_large.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_large.fasta.blosum62mt.sim2_file
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_large.fasta.blosum62mt.sim_file
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_large.fasta~
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_large.html
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_large.muscle
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_large_muscle_trim.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_oneseq.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_pair.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.b62_aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.cw_aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.dnd
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.expresso
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.g0.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.g0.cw_aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.g10.cw_aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.g10.html
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.g10.score_ascii
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.g15.cw_aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.ph
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.g15.html
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.html
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.mafft
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.mcoffee
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.muscle
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.probcons
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.score_ascii
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.score_html
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.tc_aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.tc_aln.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.tc_aln.html
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small.template_file
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sproteases_small_dna.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/struc1.pdb
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/struc2.pdb
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/struc3.pdb
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/struc4.pdb
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/struc5.pdb
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/struc6.pdb
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/struc7.pdb
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/struc8.pdb
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sv.dnd
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sv.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sv.html
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sv.maln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/t_coffee.log
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/template_file.template
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/template_file6.template
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/template_file7.template
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/test.lib
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/test.tc_lib
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/test_lib.tc_lib
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/three_pdb.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/three_pdb.dnd
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/three_pdb.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/three_pdb_two_seq.aln
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/three_pdb_two_seq.dnd
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/three_pdb_two_seq.fasta
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/three_pdb_two_seq.fasta~
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tlara_libraries.tar
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tlara_tRNA_aln10.output
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tlara_tRNA_aln50.output
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tlara_tRNA_aln51.output
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tmp_file_for_extract_from_pdb169168.1
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tmp_file_for_extract_from_pdb89508.1
|
||||
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/two_profiles.template_file
|
||||
%%PORTDOCS%%@dirrm %%DOCSDIR%%/html
|
||||
%%PORTDOCS%%@dirrm %%DOCSDIR%%
|
||||
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
|
Loading…
Add table
Reference in a new issue