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science/dakota: update 6.17.0 → 6.21.0

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This commit is contained in:
Yuri Victorovich 2025-03-30 10:07:08 -07:00
parent a580137bf5
commit 048dbfd0ed
9 changed files with 331 additions and 27 deletions
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28
science/dakota/Makefile
View file

@ -1,20 +1,18 @@
PORTNAME= dakota
DISTVERSION= 6.17.0
PORTREVISION= 12
DISTVERSION= 6.21.0
CATEGORIES= science
MASTER_SITES= https://dakota.sandia.gov/sites/default/files/distributions/public/
DISTNAME= ${PORTNAME}-${DISTVERSION}-release-public-src-cli
MASTER_SITES= https://github.com/snl-dakota/dakota/releases/download/v${DISTVERSION}/
DISTNAME= ${PORTNAME}-${DISTVERSION}-public-src-cli
DISTFILES= ${DISTNAME}${EXTRACT_SUFX}
MAINTAINER= yuri@FreeBSD.org
COMMENT= Interface between analysis codes & iterative systems analysis methods
WWW= https://dakota.sandia.gov/
WWW= https://dakota.sandia.gov \
https://github.com/snl-dakota/dakota
LICENSE= LGPL21
LICENSE_FILE= ${WRKSRC}/LICENSE
BROKEN= fails to build with boost-1.85+
BUILD_DEPENDS= nanoflann>0:math/nanoflann
LIB_DEPENDS= libblas.so:math/blas \
libboost_system.so:devel/boost-libs \
@ -24,6 +22,7 @@ LIB_DEPENDS= libblas.so:math/blas \
libgsl.so:math/gsl \
libhdf5.so:science/hdf5 \
libicui18n.so:devel/icu \
libkokkoscore.so:devel/kokkos \
liblapack.so:math/lapack \
libnlopt.so:math/nlopt \
libpng16.so:graphics/png \
@ -44,6 +43,8 @@ SHEBANG_FILES= interfaces/Python/mpitile \
scripts/dprepro.perl \
test/dakota_test.perl
CXX= ${FILESDIR}/fake-c++.sh # change to c++14
CMAKE_ON= HAVE_X_GRAPHICS # always enable graphics because w/out it a lot of unrelated files aren't installed due to bugs in the project
CMAKE_ON+= Boost_NO_BOOST_CMAKE \
DAKOTA_GIT_checkout
@ -75,16 +76,9 @@ pre-configure: # MUQ_STANMATH_DIR is lost otherwise
@${REINPLACE_CMD} 's|find_package(PkgConfig)|set(MUQ_STANMATH_DIR ${WRKSRC}/stanmath)|' ${WRKSRC}/packages/external/muq2/cmake/finds/FindSTANMATH.cmake
post-install:
# remove eigen3 that Dakota installs
cd ${STAGEDIR}${PREFIX} && ${RM} -r include/eigen3 share/eigen3
# remove cblas.h that Dakota installs
${RM} ${STAGEDIR}${PREFIX}/include/cblas.h
# remove *.orig files
${RM} ${STAGEDIR}${PREFIX}/include/colin/AppResponse.h.orig
# install libraries that it fails to install
.for l in libmuqSamplingAlgorithms.so libmuqModeling.so libmuqUtilities.so
${INSTALL_LIB} ${BUILD_WRKSRC}/packages/external/muq2/lib/${l} ${STAGEDIR}${PREFIX}/lib
.endfor
# remove eigen3 that Dakota installs, see https://github.com/snl-dakota/dakota/issues/182
@cd ${STAGEDIR}${PREFIX} && \
${RM} -r include/eigen3 share/eigen3
do-test: install # from Additional Test Suites @ https://dakota.sandia.gov/content/additional-test-suites (many tests are known to fail)
## minimal set of fast-running tests that should NOT FAIL (may DIFF, depending on platform / compiler)

6
science/dakota/distinfo
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@ -1,5 +1,5 @@
TIMESTAMP = 1674268260
SHA256 (dakota-6.17.0-release-public-src-cli.tar.gz) = a6045784426b75d4981efcc1f243a5cd74dfcf29d4572927d6162a82a12757c6
SIZE (dakota-6.17.0-release-public-src-cli.tar.gz) = 142641074
TIMESTAMP = 1743185006
SHA256 (dakota-6.21.0-public-src-cli.tar.gz) = 7dcf9f93b7bc37a24dee3acda25be280c1a49774e22d53aa1e4b0a60df62ff97
SIZE (dakota-6.21.0-public-src-cli.tar.gz) = 156415576
SHA256 (stan-dev-math-v2.18.0_GH0.tar.gz) = 53fbce2b28aea76695af7a91f51fdd356367153fc42b3573e2b91e6586eca91d
SIZE (stan-dev-math-v2.18.0_GH0.tar.gz) = 17528084

4
science/dakota/files/fake-c++.sh Executable file
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@ -0,0 +1,4 @@
#!/bin/sh
c++ "$@" -std=c++14

6
science/dakota/files/patch-CMakeLists.txt
View file

@ -1,6 +1,6 @@
--- CMakeLists.txt.orig 2022-11-11 20:23:57 UTC
--- CMakeLists.txt.orig 2024-11-12 02:01:36 UTC
+++ CMakeLists.txt
@@ -243,9 +243,11 @@ if(DAKOTA_MODULE_DAKOTA)
@@ -274,9 +274,11 @@ if(DAKOTA_MODULE_DAKOTA)
endif()
# Legacy examples
@ -14,7 +14,7 @@
add_subdirectory(dakota-examples)
endif()
@@ -268,19 +270,23 @@ install(FILES INSTALL LICENSE COPYRIGHT README
@@ -299,19 +301,23 @@ install(FILES INSTALL LICENSE COPYRIGHT README
DESTINATION ${DAKOTA_TOPFILES_INSTALL}
)

23
science/dakota/files/patch-packages_external_JEGA_eddy_utilities_include_inline_keyed__registry.hpp.inl Normal file
View file

@ -0,0 +1,23 @@
- https://github.com/snl-dakota/dakota/issues/178
--- packages/external/JEGA/eddy/utilities/include/inline/keyed_registry.hpp.inl.orig 2025-03-28 21:44:35 UTC
+++ packages/external/JEGA/eddy/utilities/include/inline/keyed_registry.hpp.inl
@@ -153,18 +153,6 @@ template<typename KeyType, typename ValueType>
}
template<typename KeyType, typename ValueType>
-bool
-keyed_registry<KeyType, ValueType>::unregister(
- const KeyType& value
- )
-{
- typename container::iterator it(this->find(this->key));
- if(it == this->_registry.end()) return false;
- this->_registry.erase(it);
- return true;
-}
-
-template<typename KeyType, typename ValueType>
typename keyed_registry<KeyType, ValueType>::const_iterator
keyed_registry<KeyType, ValueType>::find(
const KeyType& key

12
science/dakota/files/patch-src_WorkdirHelper.cpp Normal file
View file

@ -0,0 +1,12 @@
- https://github.com/snl-dakota/dakota/pull/181
--- src/WorkdirHelper.cpp.orig 2025-03-30 08:18:38 UTC
+++ src/WorkdirHelper.cpp
@@ -11,6 +11,7 @@
#include "dakota_data_util.hpp" // for strcontains
#include "dakota_global_defs.hpp"
#include <boost/array.hpp>
+#include <boost/filesystem/exception.hpp>
#include <boost/tokenizer.hpp>
#include <cassert>

12
science/dakota/files/patch-src_WorkdirHelper.hpp Normal file
View file

@ -0,0 +1,12 @@
- https://github.com/snl-dakota/dakota/pull/179
--- src/WorkdirHelper.hpp.orig 2025-03-30 07:11:51 UTC
+++ src/WorkdirHelper.hpp
@@ -17,6 +17,7 @@
#include <boost/regex.hpp>
#include <boost/iterator/filter_iterator.hpp>
+#include <boost/filesystem/directory.hpp>
#include <boost/filesystem/operations.hpp>
#include <boost/filesystem/path.hpp>
namespace bfs = boost::filesystem;

12
science/dakota/files/patch-src_util_util__data__types.hpp Normal file
View file

@ -0,0 +1,12 @@
- https://github.com/snl-dakota/dakota/issues/180
--- src/util/util_data_types.hpp.orig 2025-03-30 07:57:31 UTC
+++ src/util/util_data_types.hpp
@@ -21,6 +21,7 @@
#include <boost/serialization/array.hpp>
#include <boost/serialization/serialization.hpp>
#define EIGEN_MATRIX_PLUGIN "util_eigen_plugins.hpp"
+#undef Success // https://github.com/snl-dakota/dakota/issues/180
#include "Eigen/Dense"
/// dakota (lowercase) namespace for new %Dakota modules

255
science/dakota/pkg-plist
View file

@ -39,7 +39,9 @@ include/AllOperators.hpp.inl
include/Appl_Data.h
include/Appl_Data_NPSOL.h
include/ApplicationInterface.hpp
include/ApproximationFieldInterface.hpp
include/ApproximationInterface.hpp
include/ApreproParametersFileWriter.hpp
include/AsciiDataWriter.h
include/AverageFitnessTrackerConverger.hpp
include/AverageFitnessTrackerConverger.hpp.inl
@ -135,6 +137,7 @@ include/DakotaApproximation.hpp
include/DakotaBuildInfo.hpp
include/DakotaConstraints.hpp
include/DakotaEnvironment.hpp
include/DakotaFieldApproximation.hpp
include/DakotaGraphics.hpp
include/DakotaInterface.hpp
include/DakotaInterfaceAPI.hpp
@ -149,6 +152,7 @@ include/DakotaResponse.hpp
include/DakotaSurrogates.hpp
include/DakotaSurrogatesGP.hpp
include/DakotaSurrogatesPoly.hpp
include/DakotaSurrogatesPython.hpp
include/DakotaTPLDataTransfer.hpp
include/DakotaTraitsBase.hpp
include/DakotaVariables.hpp
@ -191,6 +195,7 @@ include/DesignVariableNatureBase.hpp
include/DesignVariableNatureBase.hpp.inl
include/DesignVariableTypeBase.hpp
include/DesignVariableTypeBase.hpp.inl
include/DigitalNet.hpp
include/DirectApplicInterface.hpp
include/DiscrepancyCalculator.hpp
include/DiscrepancyCorrection.hpp
@ -355,7 +360,6 @@ include/HermiteOrthogPolynomial.hpp
include/HierarchInterpPolyApproximation.hpp
include/HierarchSparseGridDriver.hpp
include/HierarchSurrBasedLocalMinimizer.hpp
include/HierarchSurrModel.hpp
include/HistogramBinRandomVariable.hpp
include/HypergeometricRandomVariable.hpp
include/IncrementalSparseGridDriver.hpp
@ -375,12 +379,18 @@ include/IteratorScheduler.hpp
include/JEGAConfig.hpp
include/JEGAOptimizer.hpp
include/JEGATypes.hpp
include/JSONParametersFileWriter.hpp
include/JSONResultsFileReader.hpp
include/JSONResultsParser.hpp
include/JacobiOrthogPolynomial.hpp
include/KarhunenLoeveInverseTransformation.hpp
include/KrawtchoukOrthogPolynomial.hpp
include/LARSolver.hpp
include/LDDriver.hpp
include/LDDriverAdapter.hpp
include/LHS.h
include/LHSDriver.hpp
include/LHSDriverAdapter.hpp
include/LRUDesignCache.hpp
include/LRUDesignCache.hpp.inl
include/LSQCrossValidationIterator.hpp
@ -409,6 +419,7 @@ include/Logger.hpp.inl
include/Logging.hpp
include/LognormalRandomVariable.hpp
include/LoguniformRandomVariable.hpp
include/LowDiscrepancySequence.hpp
include/MAlgorithmConfig.hpp
include/MBasicParameterDatabaseImpl.hpp
include/MConfig.hpp
@ -432,6 +443,222 @@ include/MParameterDatabase.hpp
include/MProblemConfig.hpp
include/MSolution.hpp
include/MStreamHijacker.hpp
include/MUQ/Approximation/ForwardUQ.h
include/MUQ/Approximation/GaussianProcesses/ConcatenateKernel.h
include/MUQ/Approximation/GaussianProcesses/ConstantKernel.h
include/MUQ/Approximation/GaussianProcesses/CovarianceKernels.h
include/MUQ/Approximation/GaussianProcesses/GaussianProcess.h
include/MUQ/Approximation/GaussianProcesses/KarhunenLoeveBase.h
include/MUQ/Approximation/GaussianProcesses/KarhunenLoeveExpansion.h
include/MUQ/Approximation/GaussianProcesses/KarhunenLoeveFactory.h
include/MUQ/Approximation/GaussianProcesses/KernelBase.h
include/MUQ/Approximation/GaussianProcesses/KernelImpl.h
include/MUQ/Approximation/GaussianProcesses/LinearKernel.h
include/MUQ/Approximation/GaussianProcesses/LinearTransformKernel.h
include/MUQ/Approximation/GaussianProcesses/MaternKernel.h
include/MUQ/Approximation/GaussianProcesses/ObservationInformation.h
include/MUQ/Approximation/GaussianProcesses/PeriodicKernel.h
include/MUQ/Approximation/GaussianProcesses/ProductKernel.h
include/MUQ/Approximation/GaussianProcesses/SeparableKarhunenLoeve.h
include/MUQ/Approximation/GaussianProcesses/SquaredExpKernel.h
include/MUQ/Approximation/GaussianProcesses/StateSpaceGP.h
include/MUQ/Approximation/GaussianProcesses/SumKernel.h
include/MUQ/Approximation/GaussianProcesses/WhiteNoiseKernel.h
include/MUQ/Approximation/PolynomialChaos/AdaptiveSmolyakPCE.h
include/MUQ/Approximation/PolynomialChaos/PCEFactory.h
include/MUQ/Approximation/PolynomialChaos/PolynomialChaosExpansion.h
include/MUQ/Approximation/PolynomialChaos/SmolyakEstimator.h
include/MUQ/Approximation/Polynomials/BasisExpansion.h
include/MUQ/Approximation/Polynomials/HermiteFunction.h
include/MUQ/Approximation/Polynomials/IndexedScalarBasis.h
include/MUQ/Approximation/Polynomials/Jacobi.h
include/MUQ/Approximation/Polynomials/Laguerre.h
include/MUQ/Approximation/Polynomials/Legendre.h
include/MUQ/Approximation/Polynomials/Monomial.h
include/MUQ/Approximation/Polynomials/MonotoneExpansion.h
include/MUQ/Approximation/Polynomials/OrthogonalPolynomial.h
include/MUQ/Approximation/Polynomials/PhysicistHermite.h
include/MUQ/Approximation/Polynomials/ProbabilistHermite.h
include/MUQ/Approximation/Quadrature/AdaptiveSmolyakQuadrature.h
include/MUQ/Approximation/Quadrature/ClenshawCurtisQuadrature.h
include/MUQ/Approximation/Quadrature/ExponentialGrowthQuadrature.h
include/MUQ/Approximation/Quadrature/FullTensorQuadrature.h
include/MUQ/Approximation/Quadrature/GaussPattersonQuadrature.h
include/MUQ/Approximation/Quadrature/GaussQuadrature.h
include/MUQ/Approximation/Quadrature/Quadrature.h
include/MUQ/Approximation/Quadrature/SmolyakQuadrature.h
include/MUQ/Approximation/Regression/LocalRegression.h
include/MUQ/Approximation/Regression/Regression.h
include/MUQ/Approximation/TemplatedArrayUtilities.h
include/MUQ/Inference/Filtering/KalmanFilter.h
include/MUQ/Inference/Filtering/KalmanSmoother.h
include/MUQ/Modeling/CombineVectors.h
include/MUQ/Modeling/ConstantPiece.h
include/MUQ/Modeling/ConstantVector.h
include/MUQ/Modeling/CwiseOperators/CwiseUnaryOperator.h
include/MUQ/Modeling/Distributions/Density.h
include/MUQ/Modeling/Distributions/DensityProduct.h
include/MUQ/Modeling/Distributions/Distribution.h
include/MUQ/Modeling/Distributions/Gamma.h
include/MUQ/Modeling/Distributions/Gaussian.h
include/MUQ/Modeling/Distributions/GaussianBase.h
include/MUQ/Modeling/Distributions/InverseGamma.h
include/MUQ/Modeling/Distributions/MixtureDistribution.h
include/MUQ/Modeling/Distributions/PyDistribution.h
include/MUQ/Modeling/Distributions/RandomVariable.h
include/MUQ/Modeling/Distributions/UniformBox.h
include/MUQ/Modeling/Dolfin/FenicsPiece.h
include/MUQ/Modeling/Dolfin/SwigExtract.h
include/MUQ/Modeling/Flann/FlannCache.h
include/MUQ/Modeling/GradientPiece.h
include/MUQ/Modeling/IdentityPiece.h
include/MUQ/Modeling/JacobianPiece.h
include/MUQ/Modeling/LinearAlgebra/AffineOperator.h
include/MUQ/Modeling/LinearAlgebra/AnyAlgebra.h
include/MUQ/Modeling/LinearAlgebra/AnyAlgebra2.h
include/MUQ/Modeling/LinearAlgebra/AnyVec.h
include/MUQ/Modeling/LinearAlgebra/BlockDiagonalOperator.h
include/MUQ/Modeling/LinearAlgebra/BlockRowOperator.h
include/MUQ/Modeling/LinearAlgebra/CompanionMatrix.h
include/MUQ/Modeling/LinearAlgebra/ConcatenateOperator.h
include/MUQ/Modeling/LinearAlgebra/DiagonalOperator.h
include/MUQ/Modeling/LinearAlgebra/EigenLinearOperator.h
include/MUQ/Modeling/LinearAlgebra/EigenMatrixAlgebra.h
include/MUQ/Modeling/LinearAlgebra/EigenVectorAlgebra.h
include/MUQ/Modeling/LinearAlgebra/GaussNewtonOperator.h
include/MUQ/Modeling/LinearAlgebra/GaussianOperator.h
include/MUQ/Modeling/LinearAlgebra/GeneralizedEigenSolver.h
include/MUQ/Modeling/LinearAlgebra/HessianOperator.h
include/MUQ/Modeling/LinearAlgebra/IdentityOperator.h
include/MUQ/Modeling/LinearAlgebra/KroneckerProductOperator.h
include/MUQ/Modeling/LinearAlgebra/LOBPCG.h
include/MUQ/Modeling/LinearAlgebra/LinearOperator.h
include/MUQ/Modeling/LinearAlgebra/LyapunovSolver.h
include/MUQ/Modeling/LinearAlgebra/ProductOperator.h
include/MUQ/Modeling/LinearAlgebra/ScalarAlgebra.h
include/MUQ/Modeling/LinearAlgebra/SliceOperator.h
include/MUQ/Modeling/LinearAlgebra/StochasticEigenSolver.h
include/MUQ/Modeling/LinearAlgebra/SumOperator.h
include/MUQ/Modeling/LinearAlgebra/SundialsAlgebra.h
include/MUQ/Modeling/LinearAlgebra/ZeroOperator.h
include/MUQ/Modeling/LinearSDE.h
include/MUQ/Modeling/ModGraphPiece.h
include/MUQ/Modeling/ModPiece.h
include/MUQ/Modeling/Modeling.h
include/MUQ/Modeling/MultiLogisticLikelihood.h
include/MUQ/Modeling/NodeNameFinder.h
include/MUQ/Modeling/ODE.h
include/MUQ/Modeling/ODEData.h
include/MUQ/Modeling/OneStepCachePiece.h
include/MUQ/Modeling/ProductPiece.h
include/MUQ/Modeling/PyModPiece.h
include/MUQ/Modeling/Python/PyAny.h
include/MUQ/Modeling/ReplicateOperator.h
include/MUQ/Modeling/RootfindingIVP.h
include/MUQ/Modeling/ScaleVector.h
include/MUQ/Modeling/SplitVector.h
include/MUQ/Modeling/SumPiece.h
include/MUQ/Modeling/UMBridge/UMBridgeModPiece.h
include/MUQ/Modeling/UMBridge/UMBridgeModPieceServer.h
include/MUQ/Modeling/UMBridge/httplib.h
include/MUQ/Modeling/UMBridge/json.h
include/MUQ/Modeling/UMBridge/umbridge.h
include/MUQ/Modeling/WorkGraph.h
include/MUQ/Modeling/WorkGraphEdge.h
include/MUQ/Modeling/WorkGraphNode.h
include/MUQ/Modeling/WorkGraphPiece.h
include/MUQ/Modeling/WorkPiece.h
include/MUQ/Optimization/CostFunction.h
include/MUQ/Optimization/ModPieceCostFunction.h
include/MUQ/Optimization/NLoptOptimizer.h
include/MUQ/Optimization/NewtonTrust.h
include/MUQ/Optimization/Optimizer.h
include/MUQ/SamplingAlgorithms/AMProposal.h
include/MUQ/SamplingAlgorithms/AbstractSamplingProblem.h
include/MUQ/SamplingAlgorithms/ConcatenatingInterpolation.h
include/MUQ/SamplingAlgorithms/CrankNicolsonProposal.h
include/MUQ/SamplingAlgorithms/DILIKernel.h
include/MUQ/SamplingAlgorithms/DRKernel.h
include/MUQ/SamplingAlgorithms/DefaultComponentFactory.h
include/MUQ/SamplingAlgorithms/Diagnostics.h
include/MUQ/SamplingAlgorithms/DistributedCollection.h
include/MUQ/SamplingAlgorithms/DummyKernel.h
include/MUQ/SamplingAlgorithms/ExpensiveSamplingProblem.h
include/MUQ/SamplingAlgorithms/GMHKernel.h
include/MUQ/SamplingAlgorithms/GreedyMLMCMC.h
include/MUQ/SamplingAlgorithms/ISKernel.h
include/MUQ/SamplingAlgorithms/ImportanceSampling.h
include/MUQ/SamplingAlgorithms/IndependenceProposal.h
include/MUQ/SamplingAlgorithms/InfMALAProposal.h
include/MUQ/SamplingAlgorithms/InferenceProblem.h
include/MUQ/SamplingAlgorithms/InverseGammaProposal.h
include/MUQ/SamplingAlgorithms/MALAProposal.h
include/MUQ/SamplingAlgorithms/MCKernel.h
include/MUQ/SamplingAlgorithms/MCMCFactory.h
include/MUQ/SamplingAlgorithms/MCMCProposal.h
include/MUQ/SamplingAlgorithms/MHKernel.h
include/MUQ/SamplingAlgorithms/MHProposal.h
include/MUQ/SamplingAlgorithms/MIComponentFactory.h
include/MUQ/SamplingAlgorithms/MIDummyKernel.h
include/MUQ/SamplingAlgorithms/MIInterpolation.h
include/MUQ/SamplingAlgorithms/MIKernel.h
include/MUQ/SamplingAlgorithms/MIMCMC.h
include/MUQ/SamplingAlgorithms/MIMCMCBox.h
include/MUQ/SamplingAlgorithms/MarkovChain.h
include/MUQ/SamplingAlgorithms/MixtureProposal.h
include/MUQ/SamplingAlgorithms/MonteCarlo.h
include/MUQ/SamplingAlgorithms/MultiIndexEstimator.h
include/MUQ/SamplingAlgorithms/ParallelAMProposal.h
include/MUQ/SamplingAlgorithms/ParallelAbstractSamplingProblem.h
include/MUQ/SamplingAlgorithms/ParallelFixedSamplesMIMCMC.h
include/MUQ/SamplingAlgorithms/ParallelFlags.h
include/MUQ/SamplingAlgorithms/ParallelMIComponentFactory.h
include/MUQ/SamplingAlgorithms/ParallelMIMCMCBox.h
include/MUQ/SamplingAlgorithms/ParallelMIMCMCWorker.h
include/MUQ/SamplingAlgorithms/ParallelTempering.h
include/MUQ/SamplingAlgorithms/ParallelizableMIComponentFactory.h
include/MUQ/SamplingAlgorithms/Phonebook.h
include/MUQ/SamplingAlgorithms/RemoteMIProposal.h
include/MUQ/SamplingAlgorithms/SLMCMC.h
include/MUQ/SamplingAlgorithms/SampleCollection.h
include/MUQ/SamplingAlgorithms/SampleEstimator.h
include/MUQ/SamplingAlgorithms/Sampling.h
include/MUQ/SamplingAlgorithms/SamplingAlgorithm.h
include/MUQ/SamplingAlgorithms/SamplingProblem.h
include/MUQ/SamplingAlgorithms/SamplingState.h
include/MUQ/SamplingAlgorithms/SaveSchedulerBase.h
include/MUQ/SamplingAlgorithms/SingleChainMCMC.h
include/MUQ/SamplingAlgorithms/SubsamplingMIProposal.h
include/MUQ/SamplingAlgorithms/ThinScheduler.h
include/MUQ/SamplingAlgorithms/TransitionKernel.h
include/MUQ/SamplingAlgorithms/sMMALAProposal.h
include/MUQ/Utilities/AnyHelpers.h
include/MUQ/Utilities/Cereal/BoostAnySerializer.h
include/MUQ/Utilities/Cereal/MultiIndexSerializer.h
include/MUQ/Utilities/Demangler.h
include/MUQ/Utilities/EigenUtilities.h
include/MUQ/Utilities/Exceptions.h
include/MUQ/Utilities/HDF5/AnyWriter.h
include/MUQ/Utilities/HDF5/Attributes.h
include/MUQ/Utilities/HDF5/BlockDataset.h
include/MUQ/Utilities/HDF5/H5Object.h
include/MUQ/Utilities/HDF5/HDF5File.h
include/MUQ/Utilities/HDF5/HDF5Types.h
include/MUQ/Utilities/HDF5/PathTools.h
include/MUQ/Utilities/LinearAlgebra/LinearOperator.h
include/MUQ/Utilities/MultiIndices/MultiIndex.h
include/MUQ/Utilities/MultiIndices/MultiIndexFactory.h
include/MUQ/Utilities/MultiIndices/MultiIndexLimiter.h
include/MUQ/Utilities/MultiIndices/MultiIndexSet.h
include/MUQ/Utilities/OTF2Tracer.h
include/MUQ/Utilities/PyDictConversion.h
include/MUQ/Utilities/RandomGenerator.h
include/MUQ/Utilities/RegisterClassName.h
include/MUQ/Utilities/StringUtilities.h
include/MUQ/Utilities/VariadicMacros.h
include/MUQ/Utilities/VectorSlice.h
include/MUQ/Utilities/WaitBar.h
include/MUQ/config.h
include/MainEffectAnalyzer.h
include/MainEffectsAnalyzer.h
include/MainEffectsAnalyzer3.h
@ -522,13 +749,13 @@ include/NonDAdaptiveSampling.hpp
include/NonDBayesCalibration.hpp
include/NonDC3FunctionTrain.hpp
include/NonDCalibration.hpp
include/NonDControlVariateSampling.hpp
include/NonDCubature.hpp
include/NonDDREAMBayesCalibration.hpp
include/NonDEnsembleSampling.hpp
include/NonDExpansion.hpp
include/NonDGPImpSampling.hpp
include/NonDGPMSABayesCalibration.hpp
include/NonDGenACVSampling.hpp
include/NonDGlobalEvidence.hpp
include/NonDGlobalInterval.hpp
include/NonDGlobalReliability.hpp
@ -546,6 +773,7 @@ include/NonDLocalReliability.hpp
include/NonDLocalSingleInterval.hpp
include/NonDMUQBayesCalibration.hpp
include/NonDMultifidelitySampling.hpp
include/NonDMultilevBLUESampling.hpp
include/NonDMultilevControlVarSampling.hpp
include/NonDMultilevelFunctionTrain.hpp
include/NonDMultilevelPolynomialChaos.hpp
@ -565,7 +793,6 @@ include/NonDSurrogateExpansion.hpp
include/NonDWASABIBayesCalibration.hpp
include/NonDuplicatingRouletteWheelSelector.hpp
include/NonDuplicatingRouletteWheelSelector.hpp.inl
include/NonHierarchSurrModel.hpp
include/NonLinearConstraint.h
include/NonLinearConstraintNature.hpp
include/NonLinearConstraintNature.hpp.inl
@ -659,6 +886,7 @@ include/ParamStudy.hpp
include/ParameterDatabase.hpp
include/ParameterExtractor.hpp
include/ParameterExtractor.hpp.inl
include/ParametersFileWriter.hpp
include/PecosApproximation.hpp
include/PenaltyFitnessAssessorBase.hpp
include/PenaltyFitnessAssessorBase.hpp.inl
@ -1093,6 +1321,7 @@ include/RandomUniqueInitializer.hpp
include/RandomUniqueInitializer.hpp.inl
include/RandomVariable.hpp
include/RangeVariable.hpp
include/Rank1Lattice.hpp
include/RealDesignVariableType.hpp
include/RealDesignVariableType.hpp.inl
include/RecastModel.hpp
@ -1108,6 +1337,7 @@ include/RestartVersion.hpp
include/ResultsDBAny.hpp
include/ResultsDBBase.hpp
include/ResultsDBHDF5.hpp
include/ResultsFileReader.hpp
include/ResultsManager.hpp
include/RichExtrapVerification.hpp
include/RosenblattTransformation.hpp
@ -1122,6 +1352,7 @@ include/SOGA.hpp.inl
include/SOGAOperatorGroup.hpp
include/SOGAOperatorGroup.hpp.inl
include/SOLBase.hpp
include/SamplerDriver.hpp
include/SamplingInverseTransformation.hpp
include/ScalingModel.hpp
include/ScalingOptions.hpp
@ -1165,6 +1396,8 @@ include/StandardMainLoop.hpp
include/StandardMainLoop.hpp.inl
include/StandardOperatorGroup.hpp
include/StandardOperatorGroup.hpp.inl
include/StandardParametersFileWriter.hpp
include/StandardResultsFileReader.hpp
include/Statistics.h
include/StdDeviation.h
include/SubspaceModel.hpp
@ -1593,6 +1826,7 @@ include/config.hpp
include/cougaar_levels.hpp
include/current_function.hpp
include/dak_f90_config.h
include/dakota_bit_utils.hpp
include/dakota_c3_include.hpp
include/dakota_data_io.hpp
include/dakota_data_types.hpp
@ -1607,7 +1841,6 @@ include/dakota_results_types.hpp
include/dakota_stat_util.hpp
include/dakota_system_defs.hpp
include/dakota_tabular_io.hpp
include/dakota_windows.h
include/ddace_fortran.h
include/decorator_log.hpp
include/default_types.hpp
@ -1656,6 +1889,7 @@ include/list_log.hpp
include/log4j_levels.hpp
include/log_gateways.hpp
include/logs.hpp
include/low_discrepancy_data.hpp
include/macros.hpp
include/math_tools.hpp
include/menu.h
@ -1805,6 +2039,7 @@ include/thread_pool.hpp.inl
include/threadsafe.hpp
include/tinystr.h
include/tinyxml.h
include/tolerance_intervals.hpp
include/ts_list.hpp
include/ts_list.hpp.inl
include/ts_map.hpp
@ -1822,6 +2057,7 @@ include/util_data_types.hpp
include/util_eigen_plugins.hpp
include/util_math_tools.hpp
include/util_metrics.hpp
include/util_windows.hpp
include/utilib/AbstractHashTable.h
include/utilib/AbstractHeap.h
include/utilib/AbstractSplayTree.h
@ -1947,6 +2183,8 @@ include/xtndeclare.h
include/xtndispatch.h
include/xtnset.h
lib/cmake/Dakota/DakotaConfig.cmake
lib/cmake/Dakota/DakotaDepends-%%CMAKE_BUILD_TYPE%%.cmake
lib/cmake/Dakota/DakotaDepends.cmake
lib/cmake/Dakota/DakotaTargets-%%CMAKE_BUILD_TYPE%%.cmake
lib/cmake/Dakota/DakotaTargets.cmake
lib/cmake/Dakota/DakotaVersion.cmake
@ -2586,6 +2824,15 @@ lib/libutilities.so
%%DATADIR%%/Python/dakota/interfacing/interfacing.py
%%DATADIR%%/Python/dakota/interfacing/parallel.py
%%DATADIR%%/Python/dakota/interfacing/slurm.py
%%DATADIR%%/Python/muq/Approximation/__init__.py
%%DATADIR%%/Python/muq/Inference/__init__.py
%%DATADIR%%/Python/muq/Modeling/__init__.py
%%DATADIR%%/Python/muq/Optimization/__init__.py
%%DATADIR%%/Python/muq/SamplingAlgorithms/__init__.py
%%DATADIR%%/Python/muq/Utilities/__init__.py
%%DATADIR%%/Python/muq/__init__.py
%%DATADIR%%/Python/muq/pymuqModeling/PDEModPiece.py
%%DATADIR%%/Python/muq/pymuqModeling/__init__.py
%%DATADIR%%/README
%%DATADIR%%/VERSION
%%DATADIR%%/examples/hopspack/1-var-bnds-only/example1_params.txt