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biology/{,py-}libsedml: update 2.0.32 → 2.0.33

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Reported by:	portscout
This commit is contained in:
Yuri Victorovich 2025-04-23 23:30:30 -07:00
parent 446e40bdbc
commit 0097ef9a2c
6 changed files with 16 additions and 22 deletions
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9
biology/libsedml/Makefile
View file

@ -1,6 +1,6 @@
PORTNAME= libsedml PORTNAME= libsedml
DISTVERSIONPREFIX= v DISTVERSIONPREFIX= v
DISTVERSION= 2.0.32 DISTVERSION= 2.0.33
CATEGORIES= biology devel CATEGORIES= biology devel
MAINTAINER= yuri@FreeBSD.org MAINTAINER= yuri@FreeBSD.org
@ -15,7 +15,7 @@ BUILD_DEPENDS= libsbml>0:biology/libsbml \
RUN_DEPENDS= libsbml>0:biology/libsbml \ RUN_DEPENDS= libsbml>0:biology/libsbml \
libnuml>0:biology/libnuml # when static lib libnuml.a is fixed these should be run-time dependency libnuml>0:biology/libnuml # when static lib libnuml.a is fixed these should be run-time dependency
USES= cmake compiler:c++11-lang gnome USES= cmake:testing compiler:c++11-lang gnome
USE_GNOME= libxml2 USE_GNOME= libxml2
USE_LDCONFIG= yes USE_LDCONFIG= yes
@ -23,6 +23,9 @@ USE_GITHUB= yes
GH_ACCOUNT= fbergmann GH_ACCOUNT= fbergmann
GH_PROJECT= libSEDML GH_PROJECT= libSEDML
CMAKE_OFF= BUILD_TESTS
CMAKE_TESTING_ON= BUILD_TESTS
post-install: post-install:
# no need to install LICENSE, README, VERSION # no need to install LICENSE, README, VERSION
@${RM} -r ${STAGEDIR}${DATADIR} @${RM} -r ${STAGEDIR}${DATADIR}
@ -31,4 +34,6 @@ post-install:
# the project builds static libs with -fPIC, see https://github.com/fbergmann/libSEDML/issues/155 # the project builds static libs with -fPIC, see https://github.com/fbergmann/libSEDML/issues/155
# tests as of 2.0.33: All tests passed (351 assertions in 33 test cases)
.include <bsd.port.mk> .include <bsd.port.mk>

6
biology/libsedml/distinfo
View file

@ -1,3 +1,3 @@
TIMESTAMP = 1654751397 TIMESTAMP = 1745471328
SHA256 (fbergmann-libSEDML-v2.0.32_GH0.tar.gz) = 95f0781c19e73bb86618cce1678f4238f3cc11abe070b49f2a25e869071b8069 SHA256 (fbergmann-libSEDML-v2.0.33_GH0.tar.gz) = a3f69ecb5dc1084343d4de5dc0990bdd9def2f7eb819986015d33ca9735dbe76
SIZE (fbergmann-libSEDML-v2.0.32_GH0.tar.gz) = 966584 SIZE (fbergmann-libSEDML-v2.0.33_GH0.tar.gz) = 1006915

2
biology/libsedml/pkg-plist
View file

@ -116,4 +116,4 @@ lib/cmake/sedml-targets.cmake
lib/libsedml-static.a lib/libsedml-static.a
lib/libsedml.so lib/libsedml.so
lib/libsedml.so.2 lib/libsedml.so.2
lib/libsedml.so.2.0.32 lib/libsedml.so.2.0.33

2
biology/py-libsedml/Makefile
View file

@ -1,6 +1,6 @@
PORTNAME= libsedml PORTNAME= libsedml
DISTVERSIONPREFIX= v DISTVERSIONPREFIX= v
DISTVERSION= 2.0.32 DISTVERSION= 2.0.33
CATEGORIES= biology devel CATEGORIES= biology devel
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}

6
biology/py-libsedml/distinfo
View file

@ -1,3 +1,3 @@
TIMESTAMP = 1654751643 TIMESTAMP = 1745471845
SHA256 (fbergmann-libSEDML-v2.0.32_GH0.tar.gz) = 95f0781c19e73bb86618cce1678f4238f3cc11abe070b49f2a25e869071b8069 SHA256 (fbergmann-libSEDML-v2.0.33_GH0.tar.gz) = a3f69ecb5dc1084343d4de5dc0990bdd9def2f7eb819986015d33ca9735dbe76
SIZE (fbergmann-libSEDML-v2.0.32_GH0.tar.gz) = 966584 SIZE (fbergmann-libSEDML-v2.0.33_GH0.tar.gz) = 1006915

13
biology/py-libsedml/files/patch-CMakeLists.txt
View file

@ -1,16 +1,5 @@
--- CMakeLists.txt.orig 2022-06-07 11:34:09 UTC --- CMakeLists.txt.orig 2025-04-24 05:19:57 UTC
+++ CMakeLists.txt +++ CMakeLists.txt
@@ -37,8 +37,8 @@ endif(LIBSEDML_REMOVE_WRAPPERS)
set(SWIG_EXTRA_FLAGS -DSWIGEXPORT
- -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSBML_CPP_NAMESPACE_QUALIFIER -DLIBSBML_CPP_NAMESPACE_USE
- -DLIBNUML_CPP_NAMESPACE_BEGIN -DLIBNUML_CPP_NAMESPACE_END -DLIBNUML_CPP_NAMESPACE_QUALIFIER -DLIBNUML_CPP_NAMESPACE_USE
+ -DLIBSBML_CPP_NAMESPACE_BEGIN= -DLIBSBML_CPP_NAMESPACE_END= -DLIBSBML_CPP_NAMESPACE_QUALIFIER= -DLIBSBML_CPP_NAMESPACE_USE=
+ -DLIBNUML_CPP_NAMESPACE_BEGIN= -DLIBNUML_CPP_NAMESPACE_END= -DLIBNUML_CPP_NAMESPACE_QUALIFIER= -DLIBNUML_CPP_NAMESPACE_USE=
)
if(NOT UNIX)
set(SWIG_EXTRA_FLAGS ${SWIG_EXTRA_FLAGS} -DSWIGWIN -DSWIG_CSHARP_NO_WSTRING_HELPER )
@@ -49,6 +49,7 @@ ADD_CUSTOM_COMMAND( @@ -49,6 +49,7 @@ ADD_CUSTOM_COMMAND(
OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/libsedml_wrap.cpp OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/libsedml_wrap.cpp
COMMAND "${SWIG_EXECUTABLE}" COMMAND "${SWIG_EXECUTABLE}"