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biology/coverm: fix build with char being unsigned

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error[E0308]: mismatched types
    --> /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/rust-htslib-0.44.1/src/bam/record.rs:2324:17
     |
2319 |             let ret = hts_sys::bam_mods_query_type(
     |                       ---------------------------- arguments to this function are incorrect
...
2324 |                 &mut canonical,
     |                 ^^^^^^^^^^^^^^ expected `*mut u8`, found `&mut i8`
     |
     = note:    expected raw pointer `*mut u8`
             found mutable reference `&mut i8`
This commit is contained in:
Piotr Kubaj 2024-12-26 17:48:39 +01:00
parent 099ec64e6a
commit 007dfde660
1 changed files with 20 additions and 0 deletions
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20
biology/coverm/files/patch-cargo-crates_rust-htslib-0.44.1_src_bam_record.rs Normal file
View file

@ -0,0 +1,20 @@
--- cargo-crates/rust-htslib-0.44.1/src/bam/record.rs.orig 2024-12-26 16:34:58 UTC
+++ cargo-crates/rust-htslib-0.44.1/src/bam/record.rs
@@ -2216,7 +2216,7 @@ pub struct BaseModificationMetadata {
pub struct BaseModificationMetadata {
pub strand: i32,
pub implicit: i32,
- pub canonical: i8,
+ pub canonical: c_char,
}
/// struct containing the internal state required to access
@@ -2314,7 +2314,7 @@ impl BaseModificationState<'_> {
unsafe {
let mut strand: i32 = 0;
let mut implicit: i32 = 0;
- let mut canonical: i8 = 0;
+ let mut canonical: c_char = 0;
let ret = hts_sys::bam_mods_query_type(
self.state,